View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3437_high_2 (Length: 419)

Name: NF3437_high_2
Description: NF3437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3437_high_2
NF3437_high_2
[»] chr2 (13 HSPs)
chr2 (1-193)||(873321-873517)
chr2 (228-296)||(24002345-24002413)
chr2 (161-202)||(16708919-16708960)
chr2 (161-201)||(45416302-45416342)
chr2 (162-199)||(7401436-7401473)
chr2 (169-206)||(36065962-36065999)
chr2 (169-202)||(39134418-39134451)
chr2 (169-201)||(2112652-2112684)
chr2 (161-201)||(8511013-8511053)
chr2 (169-201)||(29419310-29419342)
chr2 (161-201)||(33666013-33666053)
chr2 (161-201)||(36387047-36387087)
chr2 (169-201)||(36862497-36862529)
[»] chr4 (17 HSPs)
chr4 (228-300)||(44668633-44668705)
chr4 (228-300)||(44687909-44687981)
chr4 (228-296)||(45088954-45089022)
chr4 (236-279)||(45095432-45095475)
chr4 (319-360)||(45088872-45088913)
chr4 (167-202)||(11997343-11997378)
chr4 (161-202)||(343694-343735)
chr4 (161-202)||(11454849-11454890)
chr4 (161-202)||(16619135-16619176)
chr4 (161-202)||(23064670-23064711)
chr4 (169-198)||(35910763-35910792)
chr4 (169-202)||(50309408-50309441)
chr4 (161-202)||(53231499-53231540)
chr4 (161-201)||(22515440-22515480)
chr4 (161-201)||(23568888-23568928)
chr4 (169-201)||(31312807-31312839)
chr4 (169-201)||(53850103-53850135)
[»] chr1 (23 HSPs)
chr1 (236-297)||(44004750-44004811)
chr1 (236-283)||(43986172-43986219)
chr1 (236-288)||(19567332-19567384)
chr1 (237-281)||(43983365-43983409)
chr1 (227-283)||(43990954-43991010)
chr1 (234-281)||(43993636-43993683)
chr1 (236-281)||(43917826-43917871)
chr1 (238-282)||(43908419-43908463)
chr1 (236-295)||(23682382-23682441)
chr1 (169-202)||(44451830-44451863)
chr1 (161-207)||(14422142-14422188)
chr1 (161-211)||(28253743-28253793)
chr1 (161-210)||(3857848-3857897)
chr1 (169-210)||(14090943-14090984)
chr1 (161-206)||(32036705-32036750)
chr1 (161-202)||(35767306-35767347)
chr1 (169-202)||(38964209-38964242)
chr1 (161-202)||(40723778-40723819)
chr1 (161-201)||(15358622-15358662)
chr1 (169-201)||(26674588-26674620)
chr1 (161-209)||(36796643-36796691)
chr1 (161-201)||(48723303-48723343)
chr1 (161-201)||(52710651-52710691)
[»] chr7 (8 HSPs)
chr7 (242-283)||(41688793-41688834)
chr7 (161-202)||(36039417-36039458)
chr7 (169-205)||(24838317-24838353)
chr7 (161-209)||(33772666-33772714)
chr7 (169-210)||(19532409-19532450)
chr7 (161-201)||(2510450-2510490)
chr7 (161-201)||(5029492-5029532)
chr7 (161-201)||(41098181-41098221)
[»] chr8 (14 HSPs)
chr8 (236-283)||(42700085-42700132)
chr8 (169-202)||(1430462-1430495)
chr8 (169-201)||(34214762-34214794)
chr8 (161-208)||(36051691-36051738)
chr8 (202-296)||(24041718-24041812)
chr8 (168-210)||(37943149-37943191)
chr8 (161-202)||(2060751-2060792)
chr8 (161-202)||(22849260-22849301)
chr8 (161-202)||(35209838-35209879)
chr8 (161-210)||(44090770-44090819)
chr8 (169-201)||(15189228-15189260)
chr8 (167-207)||(30611747-30611787)
chr8 (161-201)||(36683125-36683165)
chr8 (161-201)||(36766099-36766139)
[»] chr3 (11 HSPs)
chr3 (161-202)||(52717047-52717088)
chr3 (167-210)||(43729215-43729258)
chr3 (161-210)||(16127978-16128027)
chr3 (161-202)||(28055864-28055905)
chr3 (161-202)||(28066289-28066330)
chr3 (161-202)||(43127458-43127499)
chr3 (161-202)||(53327962-53328003)
chr3 (169-201)||(7014185-7014217)
chr3 (161-201)||(7588142-7588182)
chr3 (161-201)||(53947846-53947886)
chr3 (161-201)||(55005930-55005970)
[»] chr5 (18 HSPs)
chr5 (161-208)||(7234801-7234848)
chr5 (236-283)||(8837784-8837831)
chr5 (169-208)||(12256429-12256468)
chr5 (169-210)||(6042292-6042333)
chr5 (167-204)||(6390604-6390641)
chr5 (169-202)||(7401162-7401195)
chr5 (161-202)||(8979783-8979824)
chr5 (169-210)||(9265727-9265768)
chr5 (169-210)||(18279574-18279615)
chr5 (169-202)||(25000644-25000677)
chr5 (161-218)||(33010168-33010225)
chr5 (169-202)||(39034704-39034737)
chr5 (161-201)||(14362474-14362514)
chr5 (169-201)||(25908695-25908727)
chr5 (169-201)||(34578585-34578617)
chr5 (169-201)||(36569861-36569893)
chr5 (169-201)||(37499115-37499147)
chr5 (169-201)||(41621596-41621628)
[»] scaffold0618 (1 HSPs)
scaffold0618 (161-210)||(9091-9140)
[»] scaffold0006 (1 HSPs)
scaffold0006 (169-202)||(281586-281619)
[»] chr6 (7 HSPs)
chr6 (161-210)||(16270055-16270104)
chr6 (169-202)||(20026286-20026319)
chr6 (169-202)||(27771930-27771963)
chr6 (161-201)||(7855659-7855699)
chr6 (169-201)||(12757235-12757267)
chr6 (169-197)||(14657442-14657470)
chr6 (161-201)||(31280270-31280310)
[»] scaffold0011 (1 HSPs)
scaffold0011 (169-201)||(234898-234930)


Alignment Details
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 873517 - 873321
Alignment:
Q  1 ctgagattttagttttgcattaagggtgctttaggtatttaaaattttcaaacnnnnnnnnatgcaaacaaatatccctcccaaccaattgagttaaact 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||        |||||||||||||||||||||||||||||||||||| ||    
T  873517 ctgagattttagttttgcattaagggtactttaggtatttaaaattttaaaacttttttttatgcaaacaaatatccctcccaaccaattgagttaagct 873418  T
Q  101 cacggaataatttttacaagaaccaacaagtgtgacttttttgatagggactnnnnnnntaactgaaga----tatttataaggactaaaaatttaa 193  Q
    ||||    | ||||||||||||  |||||||||||||||||||||||||| |       ||||||||||    ||||||||||||||||||||||||    
T  873417 cacgaggaattttttacaagaagtaacaagtgtgacttttttgatagggattaaaaaaataactgaagatatttatttataaggactaaaaatttaa 873321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 24002345 - 24002413
Alignment:
Q  228 ttgggttatgtggatgatgaaagagtatggagttgttgagtcatggactaaattgacaatcttccctca 296  Q
    ||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||| |||| |||||||    
T  24002345 ttgggttgtgtggatgatgaaaaagtacggagttgttgagtcatggacaaaattgaaaatcatccctca 24002413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 16708960 - 16708919
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  16708960 aactgaagatatttatagggactaaaaacttaattaaccctt 16708919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 45416342 - 45416302
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  45416342 aactgcagatatttataaggaccaaaaatttaattaaccct 45416302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 7401473 - 7401436
Alignment:
Q  162 actgaagatatttataaggactaaaaatttaattaacc 199  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  7401473 actgcagatatttatagggactaaaaatttaattaacc 7401436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 36065962 - 36065999
Alignment:
Q  169 atatttataaggactaaaaatttaattaacccttcttt 206  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  36065962 atatttatagggactaaaaacttaattaacccttcttt 36065999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 39134418 - 39134451
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccctt 202  Q
    |||||||||||||||||||| |||||||||||||    
T  39134418 atatttataaggactaaaaacttaattaaccctt 39134451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 2112652 - 2112684
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    |||||||||||||||||||| ||||||||||||    
T  2112652 atatttataaggactaaaaacttaattaaccct 2112684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 8511053 - 8511013
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| |||||||||||  ||||||||||||||||||||||    
T  8511053 aactgcagatatttatagtgactaaaaatttaattaaccct 8511013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 29419342 - 29419310
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    |||||||||||||||||||| ||||||||||||    
T  29419342 atatttataaggactaaaaacttaattaaccct 29419310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 33666053 - 33666013
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| ||||||||||| |||| ||||||||||||||||||    
T  33666053 aactgcagatatttatagggaccaaaaatttaattaaccct 33666013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 36387047 - 36387087
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||||| ||||||||| |||||||||| ||||||||||||    
T  36387047 aactgaaaatatttatagggactaaaaacttaattaaccct 36387087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 36862529 - 36862497
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    ||||||||| |||||||||||||||||||||||    
T  36862529 atatttatagggactaaaaatttaattaaccct 36862497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 44668705 - 44668633
Alignment:
Q  228 ttgggttatgtggatgatgaaagagtatggagttgttgagtcatggactaaattgacaatcttccctcaggat 300  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||  ||| |||| ||||||    
T  44668705 ttgggttgtgtggatgatgaaagagtatggagttgttgagtcatggactaaactgatgatcatcccacaggat 44668633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 44687981 - 44687909
Alignment:
Q  228 ttgggttatgtggatgatgaaagagtatggagttgttgagtcatggactaaattgacaatcttccctcaggat 300  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||  ||| |||| ||||||    
T  44687981 ttgggttgtgtggatgatgaaagagtatggagttgttgagtcatggactaaactgatgatcatcccacaggat 44687909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 45089022 - 45088954
Alignment:
Q  228 ttgggttatgtggatgatgaaagagtatggagttgttgagtcatggactaaattgacaatcttccctca 296  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||| |||| |||||||    
T  45089022 ttgggttgtgtggatgatgaaagagtatggagttattgagtcgtgggctaaattgataatcatccctca 45088954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 279
Target Start/End: Complemental strand, 45095475 - 45095432
Alignment:
Q  236 tgtggatgatgaaagagtatggagttgttgagtcatggactaaa 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45095475 tgtggatgatgaaagagtatggagttgttgagtcatggactaaa 45095432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 45088913 - 45088872
Alignment:
Q  319 gatgccttgttcatttcagaaaacggtgtccttctgctgaga 360  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  45088913 gatgccttgttcatttctgaaaacggtgttcttctgctgaga 45088872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 202
Target Start/End: Original strand, 11997343 - 11997378
Alignment:
Q  167 agatatttataaggactaaaaatttaattaaccctt 202  Q
    |||||||||||||||||||||| |||||||||||||    
T  11997343 agatatttataaggactaaaaacttaattaaccctt 11997378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 343735 - 343694
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| |||||||||||||||| ||||| |||||||||||||    
T  343735 aactgcagatatttataaggaccaaaaacttaattaaccctt 343694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 11454890 - 11454849
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| |||||||||||||||| ||||| |||||||||||||    
T  11454890 aactgcagatatttataaggaccaaaaacttaattaaccctt 11454849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 16619135 - 16619176
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| ||||||||||| |||| |||||||||||||||||||    
T  16619135 aactgcagatatttatagggaccaaaaatttaattaaccctt 16619176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 23064670 - 23064711
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| ||||||||||| |||| |||||||||||||||||||    
T  23064670 aactgcagatatttatagggaccaaaaatttaattaaccctt 23064711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 198
Target Start/End: Complemental strand, 35910792 - 35910763
Alignment:
Q  169 atatttataaggactaaaaatttaattaac 198  Q
    ||||||||||||||||||||||||||||||    
T  35910792 atatttataaggactaaaaatttaattaac 35910763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 50309441 - 50309408
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccctt 202  Q
    |||||| |||||||||||||||||||||||||||    
T  50309441 atatttgtaaggactaaaaatttaattaaccctt 50309408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 53231499 - 53231540
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| ||||||||||| |||| |||||||||||||||||||    
T  53231499 aactgcagatatttatagggaccaaaaatttaattaaccctt 53231540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 22515480 - 22515440
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||||||||||||||| |||| ||||| ||||||||||||    
T  22515480 aactgaagatatttatagggaccaaaaacttaattaaccct 22515440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 23568928 - 23568888
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| |||||||||||||||| ||||| ||||||||||||    
T  23568928 aactgcagatatttataaggaccaaaaacttaattaaccct 23568888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 31312839 - 31312807
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    |||||||||||||||||||| ||||||||||||    
T  31312839 atatttataaggactaaaaacttaattaaccct 31312807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 53850103 - 53850135
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    |||||||||||||||||||| ||||||||||||    
T  53850103 atatttataaggactaaaaacttaattaaccct 53850135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 44004811 - 44004750
Alignment:
Q  236 tgtggatgatgaaagagtatggagttgttgagtcatggactaaattgacaatcttccctcag 297  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||||    
T  44004811 tgtggatgatgaaagagtatggagttgctgagtcatggactaaattgatgatcatccctcag 44004750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 43986219 - 43986172
Alignment:
Q  236 tgtggatgatgaaagagtatggagttgttgagtcatggactaaattga 283  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  43986219 tgtggaggatgaaagagtatggagttgttgagtcatggactaaattga 43986172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 19567384 - 19567332
Alignment:
Q  236 tgtggatgatgaaagagtatggagttgttgagtcatggactaaattgacaatc 288  Q
    ||||||| ||||||||||||||||||| |||||||||||||| ||||||||||    
T  19567384 tgtggataatgaaagagtatggagttgctgagtcatggactatattgacaatc 19567332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 43983409 - 43983365
Alignment:
Q  237 gtggatgatgaaagagtatggagttgttgagtcatggactaaatt 281  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  43983409 gtggttgatgaaagagtatggagttgttgagtcatggactaaatt 43983365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 43991010 - 43990954
Alignment:
Q  227 gttgggttatgtggatgatgaaagagtatggagttgttgagtcatggactaaattga 283  Q
    |||||||| ||||||||||||||||||||||  || |||||||||||||||||||||    
T  43991010 gttgggttgtgtggatgatgaaagagtatggcattattgagtcatggactaaattga 43990954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 43993683 - 43993636
Alignment:
Q  234 tatgtggatgatgaaagagtatggagttgttgagtcatggactaaatt 281  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  43993683 tatgtggatgatgaaatagtatggagtttttgagtcatggactaaatt 43993636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 43917826 - 43917871
Alignment:
Q  236 tgtggatgatgaaagagtatggagttgttgagtcatggactaaatt 281  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||    
T  43917826 tgtggatgatgaaagagtgtggagtttttgagtcatggactaaatt 43917871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 43908419 - 43908463
Alignment:
Q  238 tggatgatgaaagagtatggagttgttgagtcatggactaaattg 282  Q
    ||||||||||||||||||||||||| | |||||||||||||||||    
T  43908419 tggatgatgaaagagtatggagttgctaagtcatggactaaattg 43908463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 23682382 - 23682441
Alignment:
Q  236 tgtggatgatgaaagagtatggagttgttgagtcatggactaaattgacaatcttccctc 295  Q
    ||||||| ||||||||||||||||||| |||||||||||||  |||||| ||| ||||||    
T  23682382 tgtggataatgaaagagtatggagttgctgagtcatggactgtattgacgatcatccctc 23682441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 44451863 - 44451830
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccctt 202  Q
    ||||||||||||||||||||||||||||||||||    
T  44451863 atatttataaggactaaaaatttaattaaccctt 44451830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 14422142 - 14422188
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaacccttctttt 207  Q
    ||||| |||||||||||||||| ||||| ||||||||||||| ||||    
T  14422142 aactgcagatatttataaggaccaaaaagttaattaacccttttttt 14422188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 28253793 - 28253743
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaacccttctttttatc 211  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| ||||||||    
T  28253793 aactgcagatatttatagggaccaaaaacttaattaacccttttttttatc 28253743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 3857897 - 3857848
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaacccttctttttat 210  Q
    ||||| |||||||||||||||| ||||| |||||||||| || |||||||    
T  3857897 aactgcagatatttataaggaccaaaaacttaattaacctttttttttat 3857848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 14090984 - 14090943
Alignment:
Q  169 atatttataaggactaaaaatttaattaacccttctttttat 210  Q
    |||||||||||||||||||| |||||||| |||| |||||||    
T  14090984 atatttataaggactaaaaacttaattaatccttatttttat 14090943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 32036750 - 32036705
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaacccttcttt 206  Q
    ||||| |||||||||||||||| ||||| |||||||||||| ||||    
T  32036750 aactgcagatatttataaggacaaaaaacttaattaaccctacttt 32036705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 35767306 - 35767347
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| ||||||||||| |||| |||||||||||||||||||    
T  35767306 aactgcagatatttatagggaccaaaaatttaattaaccctt 35767347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 38964209 - 38964242
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccctt 202  Q
    ||||||||| ||||||||||||||||||||||||    
T  38964209 atatttatagggactaaaaatttaattaaccctt 38964242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 40723778 - 40723819
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| ||||||||||| |||||||||| |||||||||||||    
T  40723778 aactgcagatatttatagggactaaaaacttaattaaccctt 40723819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 15358622 - 15358662
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||||||||||||||| |||| ||||| ||||||||||||    
T  15358622 aactgaagatatttatacggaccaaaaacttaattaaccct 15358662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 26674620 - 26674588
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    |||||||||||||||||||| ||||||||||||    
T  26674620 atatttataaggactaaaaacttaattaaccct 26674588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 36796643 - 36796691
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaacccttcttttta 209  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| ||||||    
T  36796643 aactgcagatatttatagggaccaaaaacttaattaaccctttttttta 36796691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 48723343 - 48723303
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| |||||||||||||||| ||||| ||||||||||||    
T  48723343 aactgcagatatttataaggaccaaaaacttaattaaccct 48723303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 52710691 - 52710651
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| ||||||||||| |||||||||| ||||||||||||    
T  52710691 aactgcagatatttatagggactaaaaacttaattaaccct 52710651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 41688834 - 41688793
Alignment:
Q  242 tgatgaaagagtatggagttgttgagtcatggactaaattga 283  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  41688834 tgatgaaagagtatagagttgttgagtcatggactaaattga 41688793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 36039458 - 36039417
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  36039458 aactgcagatatttatagggactaaaaatttaattaaccctt 36039417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 24838317 - 24838353
Alignment:
Q  169 atatttataaggactaaaaatttaattaacccttctt 205  Q
    |||||||||||||||||||| ||||||||||||||||    
T  24838317 atatttataaggactaaaaacttaattaacccttctt 24838353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 33772666 - 33772714
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaacccttcttttta 209  Q
    ||||| ||||||||||| |||||||||| ||||||||||||| ||||||    
T  33772666 aactgcagatatttatagggactaaaaacttaattaaccctttttttta 33772714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 19532450 - 19532409
Alignment:
Q  169 atatttataaggactaaaaatttaattaacccttctttttat 210  Q
    |||||||||||||||||||| |||||||||| || |||||||    
T  19532450 atatttataaggactaaaaacttaattaaccattttttttat 19532409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 2510490 - 2510450
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| |||||||||||||||| ||||| ||||||||||||    
T  2510490 aactgcagatatttataaggaccaaaaacttaattaaccct 2510450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 5029492 - 5029532
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| ||||||||||| |||||||||| ||||||||||||    
T  5029492 aactgcagatatttatagggactaaaaacttaattaaccct 5029532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 41098221 - 41098181
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| ||||||||||| |||||||||| ||||||||||||    
T  41098221 aactgcagatatttatatggactaaaaacttaattaaccct 41098181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 42700085 - 42700132
Alignment:
Q  236 tgtggatgatgaaagagtatggagttgttgagtcatggactaaattga 283  Q
    |||||||||||||| | |||||||||| ||||||||||||||||||||    
T  42700085 tgtggatgatgaaacaatatggagttgctgagtcatggactaaattga 42700132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 1430495 - 1430462
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccctt 202  Q
    ||||||||||||||||||||||||||||||||||    
T  1430495 atatttataaggactaaaaatttaattaaccctt 1430462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 34214762 - 34214794
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    |||||||||||||||||||||||||||||||||    
T  34214762 atatttataaggactaaaaatttaattaaccct 34214794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 36051738 - 36051691
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaacccttcttttt 208  Q
    ||||| ||||||||||| |||| ||||| |||||||||||||||||||    
T  36051738 aactgcagatatttatagggaccaaaaacttaattaacccttcttttt 36051691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 24041812 - 24041718
Alignment:
Q  202 tctttttatcactctaaggaagagagttgggttatgtggatgatgaaagagtatggagttgttgagtcatggactaaattgacaatcttccctca 296  Q
    |||||| ||||| |||||||||    ||||||| |||||||||||||| || |  | ||||||||||||||||| ||| ||| |||| |||||||    
T  24041812 tcttttgatcaccctaaggaagctcattgggttgtgtggatgatgaaaaagaacagcgttgttgagtcatggacaaaactgaaaatcatccctca 24041718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 37943191 - 37943149
Alignment:
Q  168 gatatttataaggactaaaaatttaattaacccttctttttat 210  Q
    |||||||||| |||||||||| ||||||||||||| |||||||    
T  37943191 gatatttatagggactaaaaacttaattaacccttatttttat 37943149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 2060792 - 2060751
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| ||||||||||| |||||||||| |||||||||||||    
T  2060792 aactgtagatatttatagggactaaaaacttaattaaccctt 2060751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 22849301 - 22849260
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| ||||||||||| |||||||||| |||||||||||||    
T  22849301 aactgcagatatttatagggactaaaaacttaattaaccctt 22849260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 35209838 - 35209879
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| |||||||||||||||| ||||| |||||||||||||    
T  35209838 aactgcagatatttataaggaccaaaaacttaattaaccctt 35209879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 44090770 - 44090819
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaacccttctttttat 210  Q
    ||||| ||||||||||| |||||||||| ||||||||||| | |||||||    
T  44090770 aactgcagatatttatagggactaaaaacttaattaacccatttttttat 44090819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 15189260 - 15189228
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    ||||||||| |||||||||||||||||||||||    
T  15189260 atatttatagggactaaaaatttaattaaccct 15189228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 30611747 - 30611787
Alignment:
Q  167 agatatttataaggactaaaaatttaattaacccttctttt 207  Q
    ||||||||||| |||| ||||| ||||||||||||||||||    
T  30611747 agatatttatagggaccaaaaacttaattaacccttctttt 30611787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 36683165 - 36683125
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| |||||||||||||||| ||||| ||||||||||||    
T  36683165 aactgcagatatttataaggaccaaaaacttaattaaccct 36683125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 36766099 - 36766139
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| ||||||||||| |||| ||||||||||||||||||    
T  36766099 aactgcagatatttatagggaccaaaaatttaattaaccct 36766139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 52717047 - 52717088
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| |||||||||||||||||||||| |||||||||||||    
T  52717047 aactgcagatatttataaggactaaaaacttaattaaccctt 52717088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 43729258 - 43729215
Alignment:
Q  167 agatatttataaggactaaaaatttaattaacccttctttttat 210  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||    
T  43729258 agatatttatagggaccaaaaatttaattaacccttatttttat 43729215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 16128027 - 16127978
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaacccttctttttat 210  Q
    ||||| ||||||||||| |||| ||||| |||||||||||| ||||||||    
T  16128027 aactgcagatatttatagggaccaaaaacttaattaaccctactttttat 16127978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 28055864 - 28055905
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| |||||||||||||||| ||||| |||||||||||||    
T  28055864 aactgcagatatttataaggaccaaaaacttaattaaccctt 28055905  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 28066289 - 28066330
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| |||||||||||||||| ||||| |||||||||||||    
T  28066289 aactgcagatatttataaggaccaaaaacttaattaaccctt 28066330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 43127499 - 43127458
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| |||||||||||||||| ||||| |||||||||||||    
T  43127499 aactgcagatatttataaggaccaaaaacttaattaaccctt 43127458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 53328003 - 53327962
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| ||||||||||| |||||||||| |||||||||||||    
T  53328003 aactgcagatatttatagggactaaaaacttaattaaccctt 53327962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 7014217 - 7014185
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    |||||||||||||||||||| ||||||||||||    
T  7014217 atatttataaggactaaaaacttaattaaccct 7014185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 7588142 - 7588182
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| |||||||||||||||| ||||| ||||||||||||    
T  7588142 aactgtagatatttataaggaccaaaaacttaattaaccct 7588182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 53947846 - 53947886
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| |||||||||||||||| ||||| ||||||||||||    
T  53947846 aactgcagatatttataaggaccaaaaacttaattaaccct 53947886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 55005970 - 55005930
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| ||||||||||| |||| ||||||||||||||||||    
T  55005970 aactgcagatatttatagggacaaaaaatttaattaaccct 55005930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 7234801 - 7234848
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaacccttcttttt 208  Q
    ||||| |||||||||||||||| ||||| ||||||||||||| |||||    
T  7234801 aactgcagatatttataaggaccaaaaacttaattaaccctttttttt 7234848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 8837831 - 8837784
Alignment:
Q  236 tgtggatgatgaaagagtatggagttgttgagtcatggactaaattga 283  Q
    |||||||||||||| ||||||||||||  ||||||||||| |||||||    
T  8837831 tgtggatgatgaaaaagtatggagttgccgagtcatggacaaaattga 8837784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 12256429 - 12256468
Alignment:
Q  169 atatttataaggactaaaaatttaattaacccttcttttt 208  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  12256429 atatttatagggactaaaaacttaattaacccttcttttt 12256468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 6042333 - 6042292
Alignment:
Q  169 atatttataaggactaaaaatttaattaacccttctttttat 210  Q
    |||||||||||||||||||| ||||||||||| || ||||||    
T  6042333 atatttataaggactaaaaacttaattaacccatcattttat 6042292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 6390641 - 6390604
Alignment:
Q  167 agatatttataaggactaaaaatttaattaacccttct 204  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  6390641 agatatttatagggaccaaaaatttaattaacccttct 6390604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 7401195 - 7401162
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccctt 202  Q
    |||||||||||||||||||| |||||||||||||    
T  7401195 atatttataaggactaaaaacttaattaaccctt 7401162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 8979824 - 8979783
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccctt 202  Q
    ||||| ||||||||||| |||||||||| |||||||||||||    
T  8979824 aactgcagatatttatagggactaaaaacttaattaaccctt 8979783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 9265727 - 9265768
Alignment:
Q  169 atatttataaggactaaaaatttaattaacccttctttttat 210  Q
    ||||||||| |||||||||| ||||||||||||| |||||||    
T  9265727 atatttatatggactaaaaacttaattaacccttgtttttat 9265768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 18279574 - 18279615
Alignment:
Q  169 atatttataaggactaaaaatttaattaacccttctttttat 210  Q
    ||||||||| |||||||||| ||||||||||||| |||||||    
T  18279574 atatttatagggactaaaaacttaattaacccttttttttat 18279615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 25000677 - 25000644
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccctt 202  Q
    |||||||||||||||||||| |||||||||||||    
T  25000677 atatttataaggactaaaaacttaattaaccctt 25000644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 33010225 - 33010168
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaacccttctttttatcactctaa 218  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| |||| || |||||||    
T  33010225 aactgcagatatttatagggaccaaaaacttaattaaccctttttttaataactctaa 33010168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 39034737 - 39034704
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccctt 202  Q
    |||||||||||||||||||| |||||||||||||    
T  39034737 atatttataaggactaaaaacttaattaaccctt 39034704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 14362514 - 14362474
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| |||||||||||||||| ||||| ||||||||||||    
T  14362514 aactgcagatatttataaggaccaaaaacttaattaaccct 14362474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 25908695 - 25908727
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    ||||||||| |||||||||||||||||||||||    
T  25908695 atatttatagggactaaaaatttaattaaccct 25908727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 34578585 - 34578617
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    |||||||||||||||||||| ||||||||||||    
T  34578585 atatttataaggactaaaaacttaattaaccct 34578617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 36569861 - 36569893
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    |||||||||||||||||||| ||||||||||||    
T  36569861 atatttataaggactaaaaacttaattaaccct 36569893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 37499115 - 37499147
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    |||||||||||||||||||||||| ||||||||    
T  37499115 atatttataaggactaaaaatttatttaaccct 37499147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 41621596 - 41621628
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    |||||||||||||||||||| ||||||||||||    
T  41621596 atatttataaggactaaaaacttaattaaccct 41621628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 9140 - 9091
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaacccttctttttat 210  Q
    ||||| ||||||||||| |||||||||| ||||||||||| | |||||||    
T  9140 aactgcagatatttatagggactaaaaacttaattaacccatttttttat 9091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 281586 - 281619
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccctt 202  Q
    |||||||||||||||||||| |||||||||||||    
T  281586 atatttataaggactaaaaacttaattaaccctt 281619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 16270104 - 16270055
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaacccttctttttat 210  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| |||||||    
T  16270104 aactgcagatatttatagggaccaaaaacttaattaacccttttttttat 16270055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 20026286 - 20026319
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccctt 202  Q
    |||||||||||||||||||| |||||||||||||    
T  20026286 atatttataaggactaaaaacttaattaaccctt 20026319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 27771930 - 27771963
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccctt 202  Q
    |||||||||||||||||||| |||||||||||||    
T  27771930 atatttataaggactaaaaacttaattaaccctt 27771963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 7855699 - 7855659
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| ||||||||||| |||| ||||||||||||||||||    
T  7855699 aactgcagatatttatagggaccaaaaatttaattaaccct 7855659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 12757267 - 12757235
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    |||||||||||||||||||| ||||||||||||    
T  12757267 atatttataaggactaaaaacttaattaaccct 12757235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 14657442 - 14657470
Alignment:
Q  169 atatttataaggactaaaaatttaattaa 197  Q
    |||||||||||||||||||||||||||||    
T  14657442 atatttataaggactaaaaatttaattaa 14657470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 31280270 - 31280310
Alignment:
Q  161 aactgaagatatttataaggactaaaaatttaattaaccct 201  Q
    ||||| ||||||||||||||| |||||| ||||||||||||    
T  31280270 aactgcagatatttataaggattaaaaagttaattaaccct 31280310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 234930 - 234898
Alignment:
Q  169 atatttataaggactaaaaatttaattaaccct 201  Q
    |||||||||||||||||||| ||||||||||||    
T  234930 atatttataaggactaaaaacttaattaaccct 234898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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