View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3437_low_1 (Length: 434)
Name: NF3437_low_1
Description: NF3437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3437_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Complemental strand, 39753839 - 39753402
Alignment:
| Q |
8 |
gagcagagagaatcactgaagcaataatagcaattggtgtataatacaatagatttgtcaaaaattgcagtgatatcatcactgtaatggccatcacaat |
107 |
Q |
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| T |
39753839 |
gagcagagagaatcactgaagcaataatagcaattggtgtataatacaatagatttgtcaaaaattgcagtgatatcatcactgtaatggccatcacaat |
39753740 |
T |
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| Q |
108 |
gtttgatattaaactttcacatccagcagcataattaacagcggttcgagagaatgaacctgccacaatacatatgac-----------------atttt |
190 |
Q |
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| T |
39753739 |
gtttgatattaaactttcacatccagcagcataattaacagcggttcgagagaatgaacctgccacaatacatatgacatgttaatgcataaagtatttt |
39753640 |
T |
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| Q |
191 |
gttagttagtaaatatagtaatcaaataagaaccttcttaatttatttatgttgccaataagaagaggtctaaagaggacaccgtaatggattcagttca |
290 |
Q |
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| T |
39753639 |
gttagttagtaaatatagtaatcaaataagaaccttcttaatttatttatgttgcc-------agaggtctaaagaggacaccgtaatggattcagttca |
39753547 |
T |
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| Q |
291 |
attatttaatgctaatggagtttta-nnnnnnnattctacttaggtttaaatttaataggtatattttcttgtgctttctttgatggaacttgtcttgcg |
389 |
Q |
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| T |
39753546 |
attatttaatgctaatggagttttattttttttattctacttaggtttaaatttaataggtatattttcttgtgctttctttgatggaacttgtcttgtg |
39753447 |
T |
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| Q |
390 |
ctttctaaaagcaatttcagataattggggaccaaagagactata |
434 |
Q |
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| T |
39753446 |
ctttctaaaagcaatttcagataattggggaccaaaaagactata |
39753402 |
T |
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