View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3437_low_4 (Length: 273)
Name: NF3437_low_4
Description: NF3437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3437_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 51847089 - 51846993
Alignment:
| Q |
160 |
tgggttcaaacttttcagcaattaattttgaggtatttgtcacaaaaatgggttcattatattatgaattgcacattaatttacaagggccataaac |
256 |
Q |
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| T |
51847089 |
tgggttcaaacttttcatcaattaattttgaggtatttgtcacaaaaatgggttcattatattatgaattgcacattaatttacaagggccataaac |
51846993 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 51847240 - 51847141
Alignment:
| Q |
10 |
aagaatatcaaaatgaaagaacaaaaataaaggaggtgccnnnnnnncacatgaatggcattaggcatttctttgtagaatagatcgcattggctaactt |
109 |
Q |
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| T |
51847240 |
aagaataccaaaatgaaagaacaaaaataaaggaggtgccaaaaaaacacatgaatggcattaggcatttctttgtagaatagatcgcattggctaactt |
51847141 |
T |
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