View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_high_16 (Length: 305)
Name: NF3439_high_16
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 52445825 - 52446111
Alignment:
| Q |
1 |
actaacacatttgtctacaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctcatgatatgagtttgaaccgtgacacgtatgatg |
100 |
Q |
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| T |
52445825 |
actaacacatttgtctaaaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctcatgatatgagtttgaaccctgacacgtatgatg |
52445924 |
T |
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| Q |
101 |
atgttgatgtttgatttactcttcatgacttcatgtgttgttgtataatgctttggttgagttgatgctctgttcacaatcataatgtatagttatgttg |
200 |
Q |
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| T |
52445925 |
atgttgatgtttgatttactcttc--------atgtgttgttgtataatgctttggtcgagttgatactctgttcacaatcataatgtatagttgtgttg |
52446016 |
T |
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| Q |
201 |
atgttcattattttattattggtgtttatttacatctttctattgtttcaatttatggatgattcacaatttcaatcgcaatgtacgtgtctctg |
295 |
Q |
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| T |
52446017 |
atgttcattattttattattggcgtttatttacatctttctattgtttcaatttatggatgattcacaatttcaatcacaatgtatgtgtctctg |
52446111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 52446755 - 52447031
Alignment:
| Q |
1 |
actaacacatttgtctacaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctcatgatatgagtttgaaccgtgacacgt------ |
94 |
Q |
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| T |
52446755 |
actaacatatctgtctacaagttttaggtaaacatgtaaaaatattgaaatctctaggtcggacctcatgatatgagtttgaaccttgatacgttcactt |
52446854 |
T |
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| Q |
95 |
----atgatgatgttgatgtttgatttactcttcatgacttcatgtgttgttgtataatgctttggttgagttgatgctctgttcacaatcataatgtat |
190 |
Q |
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| T |
52446855 |
atgtacgatgatattgatgtttgatttactctccgtg--------tgttgttgtataatgcttcaattgagttgatgctctatccacaatcgtaatgtat |
52446946 |
T |
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| Q |
191 |
agttatgttgatgttcattattttattattggtgtttatttacatctttctattgtttcaatttatggatgattcacaatttcaat |
276 |
Q |
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| T |
52446947 |
ggttatgttgatgttcattgttctattattggtgtttatttacacgtttttattgttttaatttagggatgatt-acaatttcaat |
52447031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 52447736 - 52447786
Alignment:
| Q |
1 |
actaacacatttgtctacaagttttaactaaacatgtaaaaatatcaaaat |
51 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52447736 |
actagcacatttgtctacaagtttgaactaaacatgtaaaaatatcaaaat |
52447786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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