View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3439_high_2 (Length: 558)

Name: NF3439_high_2
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3439_high_2
NF3439_high_2
[»] chr3 (45 HSPs)
chr3 (22-373)||(596372-596719)
chr3 (365-483)||(600684-600804)
chr3 (406-545)||(53190759-53190903)
chr3 (405-545)||(27899081-27899226)
chr3 (405-548)||(21348722-21348870)
chr3 (406-548)||(30599915-30600062)
chr3 (408-548)||(43765139-43765284)
chr3 (403-538)||(54898434-54898574)
chr3 (403-548)||(51684607-51684757)
chr3 (406-545)||(2226152-2226296)
chr3 (420-545)||(35905712-35905842)
chr3 (406-545)||(46112487-46112631)
chr3 (406-548)||(17515310-17515457)
chr3 (406-548)||(23293167-23293314)
chr3 (406-545)||(41977750-41977894)
chr3 (459-548)||(42279562-42279654)
chr3 (458-548)||(46197774-46197867)
chr3 (454-548)||(48830803-48830900)
chr3 (406-548)||(3152215-3152362)
chr3 (406-492)||(23291570-23291658)
chr3 (409-545)||(2377032-2377173)
chr3 (406-483)||(48829356-48829435)
chr3 (400-492)||(53094274-53094368)
chr3 (405-483)||(46114115-46114196)
chr3 (406-492)||(611223-611311)
chr3 (406-492)||(38191895-38191983)
chr3 (406-492)||(38193511-38193599)
chr3 (406-492)||(41979353-41979441)
chr3 (406-492)||(46308807-46308895)
chr3 (403-443)||(27897148-27897188)
chr3 (406-483)||(51686404-51686483)
chr3 (431-492)||(54412548-54412611)
chr3 (495-545)||(7884873-7884924)
chr3 (404-492)||(46609147-46609237)
chr3 (406-452)||(7884942-7884988)
chr3 (405-480)||(30598336-30598413)
chr3 (409-492)||(42282474-42282559)
chr3 (405-480)||(44267980-44268057)
chr3 (495-548)||(44276193-44276247)
chr3 (405-548)||(44794207-44794354)
chr3 (406-492)||(3150252-3150340)
chr3 (406-492)||(44795891-44795979)
chr3 (406-492)||(54900075-54900163)
chr3 (498-545)||(600805-600853)
chr3 (407-492)||(2378984-2379071)
[»] chr8 (26 HSPs)
chr8 (404-545)||(8609787-8609933)
chr8 (406-548)||(13282478-13282625)
chr8 (405-545)||(38547227-38547372)
chr8 (406-548)||(41042581-41042728)
chr8 (404-548)||(26242311-26242460)
chr8 (406-545)||(13108336-13108480)
chr8 (458-548)||(41825641-41825734)
chr8 (406-492)||(42943427-42943515)
chr8 (409-548)||(42941777-42941921)
chr8 (403-492)||(5038063-5038153)
chr8 (461-548)||(13486096-13486186)
chr8 (458-548)||(7745109-7745202)
chr8 (458-548)||(9673162-9673255)
chr8 (458-548)||(22272390-22272483)
chr8 (407-514)||(5036446-5036557)
chr8 (406-492)||(22273892-22273980)
chr8 (406-483)||(34681076-34681155)
chr8 (406-483)||(26238726-26238805)
chr8 (406-508)||(27691154-27691260)
chr8 (403-492)||(13106801-13106892)
chr8 (396-492)||(38548832-38548930)
chr8 (405-492)||(33762714-33762803)
chr8 (458-548)||(40339677-40339770)
chr8 (406-492)||(601705-601793)
chr8 (406-492)||(27692838-27692926)
chr8 (456-492)||(9672029-9672065)
[»] chr1 (26 HSPs)
chr1 (402-548)||(27087279-27087430)
chr1 (404-545)||(31238475-31238621)
chr1 (404-545)||(4855946-4856092)
chr1 (404-545)||(25278348-25278494)
chr1 (405-545)||(6818658-6818803)
chr1 (406-545)||(34778118-34778262)
chr1 (406-548)||(2869579-2869726)
chr1 (403-548)||(51896129-51896279)
chr1 (458-548)||(15104495-15104588)
chr1 (406-545)||(37344342-37344486)
chr1 (403-492)||(31236816-31236907)
chr1 (405-548)||(3013447-3013601)
chr1 (399-544)||(50556078-50556228)
chr1 (409-492)||(3011858-3011943)
chr1 (405-492)||(25278989-25279078)
chr1 (405-480)||(37088149-37088226)
chr1 (405-548)||(46583533-46583681)
chr1 (404-483)||(25278852-25278933)
chr1 (403-492)||(25276739-25276830)
chr1 (407-492)||(50554164-50554251)
chr1 (409-492)||(51894570-51894655)
chr1 (403-492)||(26223584-26223675)
chr1 (406-483)||(52641888-52641967)
chr1 (406-492)||(34776569-34776657)
chr1 (406-492)||(37345963-37346051)
chr1 (406-492)||(46582010-46582098)
[»] chr5 (20 HSPs)
chr5 (404-545)||(17574316-17574462)
chr5 (406-545)||(7267843-7267987)
chr5 (406-548)||(36057590-36057737)
chr5 (406-548)||(34327635-34327782)
chr5 (404-492)||(12738737-12738827)
chr5 (404-492)||(12801560-12801650)
chr5 (406-545)||(2179787-2179931)
chr5 (460-545)||(30468260-30468348)
chr5 (400-544)||(8539669-8539818)
chr5 (458-548)||(18624985-18625078)
chr5 (406-492)||(30463900-30463988)
chr5 (406-492)||(8541272-8541360)
chr5 (406-492)||(2852886-2852974)
chr5 (404-492)||(28813766-28813858)
chr5 (406-492)||(21842993-21843081)
chr5 (405-508)||(24541230-24541337)
chr5 (427-492)||(43492134-43492201)
chr5 (405-492)||(7269447-7269536)
chr5 (460-515)||(35395389-35395446)
chr5 (406-480)||(34328840-34328916)
[»] chr7 (28 HSPs)
chr7 (404-545)||(34776895-34777041)
chr7 (406-545)||(39859209-39859353)
chr7 (431-545)||(13168145-13168267)
chr7 (406-548)||(37115503-37115650)
chr7 (406-545)||(6602335-6602479)
chr7 (409-548)||(24228386-24228530)
chr7 (405-548)||(47386186-47386334)
chr7 (406-548)||(30940402-30940549)
chr7 (406-548)||(38474120-38474267)
chr7 (431-545)||(45359361-45359480)
chr7 (405-492)||(13169684-13169773)
chr7 (399-492)||(35403620-35403715)
chr7 (404-492)||(6605398-6605488)
chr7 (404-548)||(27666042-27666191)
chr7 (404-492)||(39857643-39857733)
chr7 (406-492)||(34774998-34775086)
chr7 (406-492)||(37113941-37114029)
chr7 (460-536)||(37796170-37796249)
chr7 (460-548)||(48852324-48852415)
chr7 (407-480)||(24226582-24226657)
chr7 (406-507)||(56330-56435)
chr7 (404-492)||(22155848-22155938)
chr7 (404-492)||(22211763-22211853)
chr7 (406-453)||(23906309-23906356)
chr7 (458-548)||(35693347-35693442)
chr7 (406-492)||(47384294-47384382)
chr7 (409-453)||(13018036-13018080)
chr7 (406-508)||(29996532-29996638)
[»] chr2 (20 HSPs)
chr2 (405-548)||(39664745-39664893)
chr2 (404-546)||(44709744-44709891)
chr2 (406-545)||(19908246-19908391)
chr2 (405-545)||(16763075-16763220)
chr2 (400-548)||(17696200-17696353)
chr2 (404-548)||(40560221-40560370)
chr2 (405-548)||(2766933-2767081)
chr2 (400-548)||(14389081-14389234)
chr2 (406-548)||(6797507-6797654)
chr2 (405-548)||(39455168-39455316)
chr2 (410-548)||(42519202-42519346)
chr2 (458-545)||(16377197-16377287)
chr2 (406-483)||(19581414-19581493)
chr2 (406-480)||(34400314-34400390)
chr2 (403-492)||(16376733-16376824)
chr2 (409-483)||(19906685-19906761)
chr2 (406-492)||(39456781-39456869)
chr2 (404-492)||(16764612-16764702)
chr2 (406-492)||(14387349-14387437)
chr2 (406-492)||(39663154-39663242)
[»] scaffold0564 (1 HSPs)
scaffold0564 (408-545)||(8264-8404)
[»] chr4 (23 HSPs)
chr4 (406-545)||(35404425-35404569)
chr4 (407-548)||(49523125-49523271)
chr4 (409-548)||(41761723-41761867)
chr4 (405-548)||(41781538-41781686)
chr4 (406-545)||(51011926-51012070)
chr4 (406-548)||(48813787-48813934)
chr4 (405-492)||(20493826-20493915)
chr4 (456-548)||(42980687-42980782)
chr4 (404-492)||(35401747-35401837)
chr4 (458-548)||(48646724-48646817)
chr4 (431-548)||(2693230-2693351)
chr4 (405-492)||(49524734-49524823)
chr4 (431-545)||(52868129-52868248)
chr4 (431-492)||(39345589-39345652)
chr4 (406-483)||(48645255-48645334)
chr4 (405-492)||(43507166-43507255)
chr4 (406-492)||(319273-319361)
chr4 (406-492)||(4173741-4173829)
chr4 (406-492)||(33266011-33266099)
chr4 (406-492)||(43508654-43508742)
chr4 (406-492)||(43519424-43519512)
chr4 (405-475)||(320918-320990)
chr4 (406-492)||(33264382-33264470)
[»] chr6 (16 HSPs)
chr6 (458-548)||(9398714-9398807)
chr6 (431-548)||(20523391-20523513)
chr6 (405-545)||(32439071-32439216)
chr6 (458-548)||(7372935-7373028)
chr6 (403-545)||(32516874-32517021)
chr6 (458-548)||(10568453-10568546)
chr6 (405-548)||(13613559-13613707)
chr6 (406-483)||(10569929-10570008)
chr6 (407-545)||(11355223-11355366)
chr6 (460-548)||(6899541-6899632)
chr6 (495-548)||(7049850-7049904)
chr6 (406-492)||(32518498-32518586)
chr6 (403-473)||(7371172-7371244)
chr6 (406-492)||(9400036-9400124)
chr6 (460-548)||(14338452-14338543)
chr6 (460-492)||(33267117-33267149)
[»] scaffold1454 (1 HSPs)
scaffold1454 (409-545)||(1266-1407)
[»] scaffold0058 (3 HSPs)
scaffold0058 (404-548)||(3292-3441)
scaffold0058 (404-548)||(4464-4613)
scaffold0058 (404-492)||(14344-14434)
[»] scaffold0002 (1 HSPs)
scaffold0002 (413-480)||(436272-436341)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-172; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 22 - 373
Target Start/End: Original strand, 596372 - 596719
Alignment:
Q  22 acggaaatggaagaagattggtggcaatatagctacaatgataagacacaaaatcatcaccttccgtgaacataatcttcttattgagattgattttgat 121  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  596372 acggaaatggaagaagattggtggcaatatagctacaatgatgagacacaaaatcatcacctttcgtgaacataatcttcttattgagattgattttgat 596471  T
Q  122 ttagagtttcttgatattaaagaatctcttgttgatctatacaacattgttgtaatttgattggtggttgaatgaataaattctatatctctaattttct 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  596472 ttagagtttcttgatcttaaagaatctcttgttgatctatacaacattgttgtaatttgattggtggttgaatgaatgaattctatatctctaattttct 596571  T
Q  222 gttgtttttcattactttaacataattccccaattcagacagacactcacaatcgttaatcctttaaattggaatggccaggaatgaataagcatactct 321  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  596572 gttgtttttcattactttaacataattccccaatt----cagacactcacactcgttaatcctttaaattggaatggccaggaatgaataagcatactct 596667  T
Q  322 cacttctcacctaaccttaatatttcgacaatttcaccgattaaaaacaaaa 373  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  596668 cacttctcacctaaccttaatatttagacaatttcaccgattaaaaagaaaa 596719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 365 - 483
Target Start/End: Original strand, 600684 - 600804
Alignment:
Q  365 aaaacaaaatggttaaatatgtttttgatacatataaatttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaat 462  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |||||||  |||||||||    
T  600684 aaaacaaaatggttaaatatgtttttggtacatataaatttgactaatacctcaaattcatccttgaattttaaaaaatcgaccaaatttgttcatgaat 600783  T
Q  463 tttgcgaaatatctatttagt 483  Q
    ||| | |||||||||||||||    
T  600784 tttacaaaatatctatttagt 600804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 406 - 545
Target Start/End: Complemental strand, 53190903 - 53190759
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| |||||||||||||||||||||||  | | |||||||||||||||||||||||||| ||||||  ||| |||||||    
T  53190903 gactaatacctcaaattcgtccttgaattttaaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacagacgtc 53190804  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||| || |||||||||||| ||||||||||||||||    
T  53190803 catcaaaatggtccctccgtccaaaagctccgttagtggtgatga 53190759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 405 - 545
Target Start/End: Complemental strand, 27899226 - 27899081
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgt 500  Q
    |||||||||||||| |||| | ||| |||||||||||||||||||||||  | | |||||||||||||||||||||||||| ||||||  ||| ||||||    
T  27899226 tgactaatacctcaaattcgtccttgaattttaaaaaatcggccaaattcgtccttgaattttgcgaaatatctatttagtccctgaattttacagacgt 27899127  T
Q  501 ccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||| |||||||| || |||||||||||| ||||||||||||||||    
T  27899126 ccataaaaatggtccctccgtccaaaagctccgttagtggtgatga 27899081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 405 - 548
Target Start/End: Original strand, 21348722 - 21348870
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgt 500  Q
    |||||||||||||| |||  | ||| |||||||||||||||||||||||  | | |||||||||||||||||||||||||| ||||||  ||| ||||||    
T  21348722 tgactaatacctcaaatttgtccttgaattttaaaaaatcggccaaattcgtccttgaattttgcgaaatatctatttagtccctgaattttacagacgt 21348821  T
Q  501 ccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||||| || |||||||||||| | |||||||||||| ||||    
T  21348822 ccatcaaaatggtccctccgtccaaaagctctgttagtggtgataatgt 21348870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 406 - 548
Target Start/End: Complemental strand, 30600062 - 30599915
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatttt--catgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | |||||||||| | |||||||||||||||   | |||||||||||||||||||||||||| ||||||  ||| |||||||    
T  30600062 gactaatacctcaaattcgtccttaaatttttacaaatcggccaaatttgtccctgaattttgcgaaatatctatttagtccctgaattttagagacgtc 30599963  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
     ||||||||||| || |||||||||||| | |||||||||||||||||    
T  30599962 gatcaaaatggtccctccgtccaaaagctctgttagtggtgatgatgt 30599915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 408 - 548
Target Start/End: Original strand, 43765139 - 43765284
Alignment:
Q  408 ctaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtcca 503  Q
    ||||||||||| |||| | ||| |||||| ||||||||| ||||||  |||  |||||||||||||||||||||||||| |||||  ||| |||||||||    
T  43765139 ctaatacctcaaattcgtccttgaattttcaaaaatcggtcaaattcgttccggaattttgcgaaatatctatttagtttctgaattttacagacgtcca 43765238  T
Q  504 tcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||| || || ||||||||| |||||||||||||||||||    
T  43765239 tcaaaatggtccctccatccaaaagctccgttagtggtgatgatgt 43765284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 403 - 538
Target Start/End: Original strand, 54898434 - 54898574
Alignment:
Q  403 tttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagac 498  Q
    |||||||||||||||| |||| | ||| |||||||||||||||| ||||||  | | |||||||||||||||||||||||||| ||||||  ||| ||||    
T  54898434 tttgactaatacctcaaattcgtccttgaattttaaaaaatcggtcaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacagac 54898533  T
Q  499 gtccatcaaaatggtc-caccgtccaaaagccccgttagtg 538  Q
    || ||||||||||||| | |||||||||||| |||||||||    
T  54898534 gttcatcaaaatggtctctccgtccaaaagctccgttagtg 54898574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 403 - 548
Target Start/End: Original strand, 51684607 - 51684757
Alignment:
Q  403 tttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattata--gac 498  Q
    ||||||||||| |||| |||| | ||| |||||| ||||||| ||||||||  | | |||||||||| ||||||||||||||| | |||||| ||  |||    
T  51684607 tttgactaatatctcaaattcgtccttgaattttcaaaaatcagccaaattcatccctgaattttgcaaaatatctatttagtccttgaattttacagac 51684706  T
Q  499 gtccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  51684707 gtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatgatgt 51684757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 406 - 545
Target Start/End: Complemental strand, 2226296 - 2226152
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| |||||||||||||||||||||||  | | |||||||||||||||||||||||||| ||||||  ||| ||||||     
T  2226296 gactaatacctcaaattcgtccttgaattttaaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacagacgtt 2226197  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||| | || |||||||||| | | ||||||||||||||    
T  2226196 catcaaaatgttccctccgtccaaaaactctgttagtggtgatga 2226152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 420 - 545
Target Start/End: Complemental strand, 35905842 - 35905712
Alignment:
Q  420 attcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggt-c 514  Q
    |||||| ||| |||||||||||||||| ||||||  | | |||||||||||||||||||||||||| ||||||  ||| |||||| |||||||||||| |    
T  35905842 attcatccttgaattttaaaaaatcggtcaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacagacgttcatcaaaatggtcc 35905743  T
Q  515 caccgtccaaaagccccgttagtggtgatga 545  Q
    | |||||||||||| ||| ||||||||||||    
T  35905742 ctccgtccaaaagctccggtagtggtgatga 35905712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 406 - 545
Target Start/End: Original strand, 46112487 - 46112631
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| |||||||||||||||||||||||  ||  |||||||||| ||||||||||||||| | ||||  ||| |||||||    
T  46112487 gactaatacctcaaattcgtccttgaattttaaaaaatcggccaaattcgttattgaattttgcaaaatatctatttagtccatgaattttacagacgtc 46112586  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||| || |||| |||||||   ||||||||||||||    
T  46112587 catcaaaatggtccctccgttcaaaagctatgttagtggtgatga 46112631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 406 - 548
Target Start/End: Original strand, 17515310 - 17515457
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| |||||| |||||| |||||||||  |   |||||||||||||||||||||||||| ||||||  ||| | |||||    
T  17515310 gactaatacctcaaattcttccttgaatttttaaaaattggccaaattcatcgctgaattttgcgaaatatctatttagtccctgaattttacaaacgtc 17515409  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||| || | |||||||| | |||||||||||||||||||    
T  17515410 catcaaaatggtccctctgtccaaaatcaccgttagtggtgatgatgt 17515457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 406 - 548
Target Start/End: Complemental strand, 23293314 - 23293167
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaattttca--tgaattttgcgaaatatctatttagttcctgaattataga--cgtc 501  Q
    ||||||||||||| |||  ||||| |||||  ||||||| ||||||||  |   |||||||||||||||||||||||||| | |||||| || |  ||||    
T  23293314 gactaatacctcaaatttgttcttgaatttcgaaaaatcagccaaattcgcccttgaattttgcgaaatatctatttagtccatgaattttacaaacgtc 23293215  T
Q  502 catcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||| ||||  |||||||||||| |||||||||||||||||||    
T  23293214 catcaaaatagtccctccgtccaaaagctccgttagtggtgatgatgt 23293167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 406 - 545
Target Start/End: Original strand, 41977750 - 41977894
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattata--gacgtc 501  Q
    ||||||||||||| |||| | ||| ||||||||||||||||||||||   | | ||||||| |||||||||| | ||||| |||||||| ||  ||||||    
T  41977750 gactaatacctcaaattcgtccttgaattttaaaaaatcggccaaatacgtccctgaatttggcgaaatatcaaattagtccctgaattttacagacgtc 41977849  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    | |||||||||| || ||||||||||||  ||||| |||||||||    
T  41977850 cgtcaaaatggtccctccgtccaaaagcttcgttaatggtgatga 41977894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 459 - 548
Target Start/End: Original strand, 42279562 - 42279654
Alignment:
Q  459 gaattttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||| ||||||||||||||| ||||||  ||| ||||||| ||||||||||| || |||||||||||| | |||||||||||||||||    
T  42279562 gaattttgcaaaatatctatttagtccctgaattttacagacgtctatcaaaatggtccctccgtccaaaagctctgttagtggtgatgatgt 42279654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 46197774 - 46197867
Alignment:
Q  458 tgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||| ||||||||||||||||||||||  ||| |||||||||| |||||||| ||  ||||||||||  ||||||||| |||||||||    
T  46197774 tgaattttgcaaaatatctatttagttcctgaattttacagacgtccattaaaatggtcccttcgtccaaaagttccgttagtgatgatgatgt 46197867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 454 - 548
Target Start/End: Complemental strand, 48830900 - 48830803
Alignment:
Q  454 ttcatgaattttgcgaaatatctatttagttcctgaattata--gacgtccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||  |||||||||||||||||   |||||| ||  ||||||||||||||||||||  |||||||||||| | |||||||||||||||||    
T  48830900 ttcatgaatttaacgaaatatctatttagtctttgaattttacggacgtccatcaaaatggtccctccgtccaaaagctctgttagtggtgatgatgt 48830803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 406 - 548
Target Start/End: Complemental strand, 3152362 - 3152215
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| ||| || |||||||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||  ||| |||||||    
T  3152362 gactaatacctcaaatttatccttaaattttgaaaaatcggccaatttcatccctgaattttgcgaaatatcaaattagtccctgaattttacagacgtc 3152263  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||   || || |||||||||||  |||||| | ||||||||||    
T  3152262 catcaaatccgtccctccgtccaaaaggtccgttaatagtgatgatgt 3152215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 23291570 - 23291658
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||| | |||| | ||| |||||||||||||||||||||||  | | ||||||||||||||||||||||||||  |||||||    
T  23291570 gactaataccttaaattcgtccttgaattttaaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagtctctgaatt 23291658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 545
Target Start/End: Original strand, 2377032 - 2377173
Alignment:
Q  409 taatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattata--gacgtccat 504  Q
    |||||||||| |||| || || |||||| |||||| | |||||||  | | |||||||||| ||| || ||||||||  ||||||| ||  |||||||||    
T  2377032 taatacctcaaattcgtttttgaattttcaaaaattgaccaaattcgtccctgaattttgcaaaaaatatatttagtctctgaattttacagacgtccat 2377131  T
Q  505 caaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    ||||||||| || ||||| |||||| ||||||||||||||||    
T  2377132 caaaatggttcctccgtctaaaagctccgttagtggtgatga 2377173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 483
Target Start/End: Original strand, 48829356 - 48829435
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaattt--tcatgaattttgcgaaatatctatttagt 483  Q
    ||||||||||||| |||| | ||| |||||| |||| || |||||||||  || ||||||||||||||||||||||||||    
T  48829356 gactaatacctcaaattcgtccttgaattttcaaaattcagccaaatttattcctgaattttgcgaaatatctatttagt 48829435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 492
Target Start/End: Complemental strand, 53094368 - 53094274
Alignment:
Q  400 aaatttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||| |||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  53094368 aaatatgactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 53094274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 483
Target Start/End: Complemental strand, 46114196 - 46114115
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaa-tcggccaaatttt--catgaattttgcgaaatatctatttagt 483  Q
    |||||| ||||||| ||| || ||| |||||||||||| ||||||||||||   | ||||||||||||||||||||||||||    
T  46114196 tgactactacctcaaatttatccttgaattttaaaaaaatcggccaaatttgtccttgaattttgcgaaatatctatttagt 46114115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 611311 - 611223
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||||||||||| ||||||||  | | |||||||| ||||||| ||||||||  ||||||||    
T  611311 gactaatacctcaaattcgtccttgaattttaaaaaatcagccaaattcgtccctgaatttttcgaaatagctatttagcccctgaatt 611223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 38191895 - 38191983
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | |||||||||| |||||| |||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  38191895 gactaatacctcaaattcgtccttaaattttgaaaaattggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 38191983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 38193599 - 38193511
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  38193599 gactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 38193511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 41979441 - 41979353
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  41979441 gactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 41979353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 46308807 - 46308895
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  46308807 gactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 46308895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 443
Target Start/End: Original strand, 27897148 - 27897188
Alignment:
Q  403 tttgactaatacctcatattcattcttaaattttaaaaaat 443  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  27897148 tttgactaatacctcaaattctttcttaaattttaaaaaat 27897188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 483
Target Start/End: Complemental strand, 51686483 - 51686404
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagt 483  Q
    ||||||||||||| |||| | |||||||||| ||||||| ||||||||  | | | ||||||||||||||| ||||||||    
T  51686483 gactaatacctcaaattcgtccttaaattttcaaaaatcagccaaattcgtccctaaattttgcgaaatatttatttagt 51686404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 492
Target Start/End: Complemental strand, 54412611 - 54412548
Alignment:
Q  431 aattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| || ||||||  | | |||||||||||| ||||||||||||||||||||||    
T  54412611 aattttaaaaaattggtcaaattcgtccttgaattttgcgagatatctatttagttcctgaatt 54412548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 545
Target Start/End: Complemental strand, 7884924 - 7884873
Alignment:
Q  495 agacgtccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||||||||||||  |||||||||||  ||||||||||||||||    
T  7884924 agacgtccatcaaaatggtccctccgtccaaaagttccgttagtggtgatga 7884873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 492
Target Start/End: Original strand, 46609147 - 46609237
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||| |||| |||| ||||| |||||| ||||||||||||| ||  | | ||||||||| |||||||| | ||||| ||||||||    
T  46609147 ttgactaatatctcaaattcgttcttgaattttgaaaaatcggccaatttcgtccctgaattttgtgaaatatcaaattagtccctgaatt 46609237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 452
Target Start/End: Complemental strand, 7884988 - 7884942
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaat 452  Q
    ||||||||||||| |||| | ||| ||||||||||||||||||||||    
T  7884988 gactaatacctcaaattcgtccttgaattttaaaaaatcggccaaat 7884942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 480
Target Start/End: Original strand, 30598336 - 30598413
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctattt 480  Q
    |||||||||||||| |||| | ||| |||||| ||||||||| ||||||  | | |||||||||||||||| ||||||    
T  30598336 tgactaatacctcaaattcgtccttgaattttcaaaaatcggtcaaatttgtccctgaattttgcgaaatagctattt 30598413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 492
Target Start/End: Complemental strand, 42282559 - 42282474
Alignment:
Q  409 taatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||| |||| | ||| |||||| ||||||| | ||||||  ||  |||||||||||||||||||||||||| | ||||||    
T  42282559 taatacctcaaattcgtccttgaattttcaaaaatcagtcaaattcgtttctgaattttgcgaaatatctatttagtccttgaatt 42282474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 480
Target Start/End: Original strand, 44267980 - 44268057
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctattt 480  Q
    |||||||||||||| |||| | ||| |||||| ||||||||||||||||  |   |||||||||||||||| ||||||    
T  44267980 tgactaatacctcaaattcgtccttgaattttcaaaaatcggccaaattcatctctgaattttgcgaaatagctattt 44268057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 548
Target Start/End: Complemental strand, 44276247 - 44276193
Alignment:
Q  495 agacgtccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||| |||||||||||||||  |||||||||||| | |||||||||||||||||    
T  44276247 agacgcccatcaaaatggtccctccgtccaaaagctctgttagtggtgatgatgt 44276193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 548
Target Start/End: Original strand, 44794207 - 44794354
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattat--agacgt 500  Q
    |||||||||||||| |||| | ||| |||||| |||| |||||||| ||  | | |||||||||||||||||| | ||||| |||||||| |  ||| ||    
T  44794207 tgactaatacctcaaattcgtccttgaattttgaaaa-tcggccaatttcatccctgaattttgcgaaatatcaaattagtccctgaattttgcagaagt 44794305  T
Q  501 ccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||| | || || |||||||||||  |||||| | ||||||||||    
T  44794306 ccatcaaattcgtccctccgtccaaaaggtccgttaatagtgatgatgt 44794354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 3150252 - 3150340
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||| ||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  3150252 gactaatacctcaaattcgtccttgaattttgaaaaatcggtcaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 3150340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 44795979 - 44795891
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| |||||||||| || ||  ||| |||||||||||||||||| | ||||| | ||||||    
T  44795979 gactaatacctcaaattcgtccttgaattttgaaaaatcggctaatttcgttcctgaattttgcgaaatatcaaattagtccatgaatt 44795891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 54900163 - 54900075
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | || || ||||||||    
T  54900163 gactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaatttgtccctgaatt 54900075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 545
Target Start/End: Original strand, 600805 - 600853
Alignment:
Q  498 cgtccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatga 545  Q
    ||||||||||||||||||  ||||| |||||| ||||||||||||||||    
T  600805 cgtccatcaaaatggtccctccgtctaaaagctccgttagtggtgatga 600853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 492
Target Start/End: Complemental strand, 2379071 - 2378984
Alignment:
Q  407 actaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||| |||| | ||| |||||||||||||||| ||| ||  | | |||||||||| ||||| ||||||||| | ||||||    
T  2379071 actaatacctcaaattcgtccttgaattttaaaaaatcggtcaatttcgtccctgaattttgcaaaatagctatttagtccttgaatt 2378984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 404 - 545
Target Start/End: Complemental strand, 8609933 - 8609787
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacg 499  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||||||  | | |||||||||||||||||||||||||| ||||||  ||| |||||    
T  8609933 ttgactaatacctcaaattcgttcttgaattttaaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacagacg 8609834  T
Q  500 tccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||||| || |||||||||||| ||||||||||||||||    
T  8609833 tccatcaaaatggtccctccgtccaaaagctccgttagtggtgatga 8609787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 406 - 548
Target Start/End: Original strand, 13282478 - 13282625
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| |||||||||||||||||||||||  | | |||||||||||||||||||||||||| ||||||  ||| | |||||    
T  13282478 gactaatacctcaaattcgtccttgaattttaaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacaaacgtc 13282577  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||| || |||||||||||| |||||||||||||||||||    
T  13282578 catcaaaatggtccctccgtccaaaagctccgttagtggtgatgatgt 13282625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 405 - 545
Target Start/End: Original strand, 38547227 - 38547372
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaat--tttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgt 500  Q
    ||||||||||||||  ||| | ||| ||||||||||||||||||||||   | |||||||||||||||||||| | ||||| ||||||  ||| ||||||    
T  38547227 tgactaatacctcaagttcgtccttgaattttaaaaaatcggccaaatacgtccatgaattttgcgaaatatcaaattagtccctgaattttacagacgt 38547326  T
Q  501 ccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    ||||||||||||| || || ||||||||| ||||||||||||||||    
T  38547327 ccatcaaaatggtccctccatccaaaagctccgttagtggtgatga 38547372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 406 - 548
Target Start/End: Complemental strand, 41042728 - 41042581
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatttt--catgaattttgcgaaatatctatttagttcctgaattataga--cgtc 501  Q
    ||||||||||| | || | | ||| ||||||||||||| ||||||||||   | ||||||||| |||||||||||||||| |||||||| || |  ||||    
T  41042728 gactaataccttaaatccgtccttgaattttaaaaaattggccaaatttgtccctgaattttgtgaaatatctatttagtccctgaattttacaggcgtc 41042629  T
Q  502 catcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||    
T  41042628 catcaaaatggtccctccgtccaaaagctccgttagtggtgatgatgt 41042581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 404 - 548
Target Start/End: Complemental strand, 26242460 - 26242311
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacg 499  Q
    |||| ||||||||||  ||| ||||| |||||| ||||||| ||||||||  | | | ||||||||||||||||||||||||  |||||  ||| |||||    
T  26242460 ttgattaatacctcaatttcgttcttgaattttcaaaaatcagccaaattcgtccctaaattttgcgaaatatctatttagtctctgaattttacagacg 26242361  T
Q  500 tccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||||| || |||||||||||| |||||||||| ||||||||    
T  26242360 tccatcaaaatggtccctccgtccaaaagctccgttagtggcgatgatgt 26242311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 406 - 545
Target Start/End: Complemental strand, 13108480 - 13108336
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    |||||||| |||| |||| | ||| ||||||||||||||||| ||||   | | |||||||||||||||||| | ||||| ||||||  ||| |||||||    
T  13108480 gactaataactcaaattcgtccttgaattttaaaaaatcggctaaatacgtccctgaattttgcgaaatatcaaattagtccctgaattttacagacgtc 13108381  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||| || ||||||||||||  |||||||||||||||    
T  13108380 catcaaaatggtccctccgtccaaaagcttcgttagtggtgatga 13108336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 41825734 - 41825641
Alignment:
Q  458 tgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggtc-caccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||||||||||||||||| ||||||  ||| |||||||||||||||||||| | |||||||||||| | |||||| ||||||||||    
T  41825734 tgaattttgcgaaatatctatttagtccctgaattttacagacgtccatcaaaatggtcactccgtccaaaagctctgttagtagtgatgatgt 41825641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 42943515 - 42943427
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||||||||||||||||||||  | | |||||||||||||||||||||||||| ||||||||    
T  42943515 gactaatacctcaaattcgtccttgaattttaaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagtccctgaatt 42943427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 409 - 548
Target Start/End: Original strand, 42941777 - 42941921
Alignment:
Q  409 taatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccat 504  Q
    |||||||||| |||| | ||| |||||||||||||| ||||||||  | | ||||||||| ||||||| |||||||| ||||||  ||| ||| ||||||    
T  42941777 taatacctcaaattcgtccttgaattttaaaaaatcagccaaattcgtccctgaattttgagaaatatttatttagtccctgaattttacagatgtccat 42941876  T
Q  505 caaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||| || || |||||||||| | |||||||||| ||||||||    
T  42941877 caaaatagtccctccgtccaaaatctccgttagtggagatgatgt 42941921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 492
Target Start/End: Complemental strand, 5038153 - 5038063
Alignment:
Q  403 tttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||||| |||| | ||| |||||||||||||||| ||||||  ||| |||||||||||||||| ||||||||| ||||||||    
T  5038153 tttgactaatacctcaaattcgt-cttgaattttaaaaaatcggtcaaattcgttcttgaattttgcgaaatagctatttagtccctgaatt 5038063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 461 - 548
Target Start/End: Complemental strand, 13486186 - 13486096
Alignment:
Q  461 attttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||||||||||||||| ||||||  ||| ||||||||||||||||||| || | |||||||||| || ||||| ||||||||||    
T  13486186 attttgcgaaatatctatttagtccctgaattttacagacgtccatcaaaatggtccctctgtccaaaagctccattagtagtgatgatgt 13486096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 7745202 - 7745109
Alignment:
Q  458 tgaattttgcgaaatatctatttagttcctgaattata--gacgtccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||||||||| |||||||| |||| ||| ||  ||| ||||||||||||||||  || ||||||||| |||||||||||||||||||    
T  7745202 tgaattttgcgaaatatttatttagtccctgtattttacagacatccatcaaaatggtccctccatccaaaagctccgttagtggtgatgatgt 7745109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 9673255 - 9673162
Alignment:
Q  458 tgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||| |||||||||||||| | ||||||  ||| ||||||||||||||||||| || ||||| ||||||  ||||||||||||||||||    
T  9673255 tgaattttgtgaaatatctatttaatccctgaattttacagacgtccatcaaaatggtccctccgtctaaaagcttcgttagtggtgatgatgt 9673162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 22272390 - 22272483
Alignment:
Q  458 tgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||| |||||||||||||| ||||||  ||| | |||||||||||||| || || || ||||||||| |||||||||||||||||||    
T  22272390 tgaattttgcgtaatatctatttagtccctgaattttacaaacgtccatcaaaatagtccctccatccaaaagctccgttagtggtgatgatgt 22272483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 514
Target Start/End: Original strand, 5036446 - 5036557
Alignment:
Q  407 actaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtcc 502  Q
    |||||||||||| |||| | |||||||||||||||||| | ||||||  | | ||||||||| |||||||||||||||| | ||||  ||| |||||||     
T  5036446 actaatacctcaaattcgtccttaaattttaaaaaatccgtcaaattcgtccctgaattttgtgaaatatctatttagtccttgaattttacagacgtct 5036545  T
Q  503 atcaaaatggtc 514  Q
    ||||||||||||    
T  5036546 atcaaaatggtc 5036557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 22273980 - 22273892
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaattt-tc-atgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||  | ||| |||||||||||||||||||||||| ||  |||||||||| ||||||||||||||| ||||||||    
T  22273980 gactaatacctcaaatttgtccttgaattttaaaaaatcggccaaatttgtctctgaattttgcaaaatatctatttagtccctgaatt 22273892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 406 - 483
Target Start/End: Complemental strand, 34681155 - 34681076
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagt 483  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||||||  | | ||||||||||||||||||||||||||    
T  34681155 gactaatacctcaaattcgtccttgaattttcaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagt 34681076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 483
Target Start/End: Original strand, 26238726 - 26238805
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagt 483  Q
    ||||||||||||| |||| | ||| |||||| ||||||| ||||||||  | | ||||||||||||||||||||||||||    
T  26238726 gactaatacctcaaattcgtccttgaattttcaaaaatcagccaaattcgtccctgaattttgcgaaatatctatttagt 26238805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 508
Target Start/End: Original strand, 27691154 - 27691260
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||  ||| |||||||    
T  27691154 gactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaattttacagacgtc 27691253  T
Q  502 catcaaa 508  Q
    |||||||    
T  27691254 catcaaa 27691260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 492
Target Start/End: Original strand, 13106801 - 13106892
Alignment:
Q  403 tttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||| | |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  13106801 tttgactaataccttaaattcgtccttgaattttgaaaaatcggccaatttcatccctgaattttgcgaaatatcaaattagtccctgaatt 13106892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 492
Target Start/End: Complemental strand, 38548930 - 38548832
Alignment:
Q  396 atataaatttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||| || |||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||| | ||||||||    
T  38548930 atatatatatgactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattaatccctgaatt 38548832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 492
Target Start/End: Complemental strand, 33762803 - 33762714
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||| ||||||||| | ||||| ||||||||    
T  33762803 tgactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttacgaaatatcaaattagtccctgaatt 33762714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 40339770 - 40339677
Alignment:
Q  458 tgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||| || |||||||||||||||| | ||||  ||| ||| ||||||||||||||| ||  | ||||||||| |||||||| ||||||||||    
T  40339770 tgaattatgtgaaatatctatttagtccatgaattttacagatgtccatcaaaatggtcccttcatccaaaagctccgttagtagtgatgatgt 40339677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 601793 - 601705
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||| ||||||||| | ||||| ||||||||    
T  601793 gactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaatttttcgaaatatcaaattagtccctgaatt 601705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 27692926 - 27692838
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||| ||||||| | ||||| ||||||||    
T  27692926 gactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcaaaatatcaaattagtccctgaatt 27692838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 492
Target Start/End: Original strand, 9672029 - 9672065
Alignment:
Q  456 catgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||||||||||||||||| || |||||    
T  9672029 catgaattttgcgaaatatctatttagtccccgaatt 9672065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 402 - 548
Target Start/End: Original strand, 27087279 - 27087430
Alignment:
Q  402 atttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttataga 497  Q
    ||||||||||||||||| |||| | |||||||||||||||||||| ||||||  | | |||||||||||||||||||||||||| ||||||  ||| | |    
T  27087279 atttgactaatacctcaaattcgtccttaaattttaaaaaatcggtcaaatttgtccctgaattttgcgaaatatctatttagtccctgaattttacaaa 27087378  T
Q  498 cgtccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||||||||||    
T  27087379 cgtccatcaaaatggcccatccgtccaaaagctccgttagtggtgatgatgt 27087430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 404 - 545
Target Start/End: Complemental strand, 31238621 - 31238475
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatttt--catgaattttgcgaaatatctatttagttcctgaa--ttatagacg 499  Q
    ||||||||||||||| |||  | ||| ||||||||||||||||||||||||   | |||||||||||||||||||||||||| ||||||  ||| |||||    
T  31238621 ttgactaatacctcaaatttgtccttgaattttaaaaaatcggccaaatttgtccctgaattttgcgaaatatctatttagtccctgaattttacagacg 31238522  T
Q  500 tccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatga 545  Q
    ||||||||||||||||| | |||||||||| ||||||||||||||||    
T  31238521 tccatcaaaatggtccatctgtccaaaagctccgttagtggtgatga 31238475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 404 - 545
Target Start/End: Complemental strand, 4856092 - 4855946
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacg 499  Q
    ||||||||||||||| |||| | ||| ||||||||||||||||||||||   | | |||||||||||||||||| | ||||| ||||||  ||| |||||    
T  4856092 ttgactaatacctcaaattcgtccttgaattttaaaaaatcggccaaatacgtccctgaattttgcgaaatatcaaattagtccctgaattttacagacg 4855993  T
Q  500 tccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||||| || |||||||||||| |||||| |||||||||    
T  4855992 tccatcaaaatggtccctccgtccaaaagctccgttaatggtgatga 4855946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 404 - 545
Target Start/End: Complemental strand, 25278494 - 25278348
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacg 499  Q
    ||||||||||||||| |||| | ||| |||||||||||||||| ||||||  | | |||||||||||||||| ||||||||| | ||||  ||| | |||    
T  25278494 ttgactaatacctcaaattcgtccttgaattttaaaaaatcggtcaaattcgtccctgaattttgcgaaatacctatttagtccttgaattttacatacg 25278395  T
Q  500 tccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||||| || |||||||||||| ||||||||||||||||    
T  25278394 tccatcaaaatggtccctccgtccaaaagctccgttagtggtgatga 25278348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 405 - 545
Target Start/End: Complemental strand, 6818803 - 6818658
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattata--gacgt 500  Q
    |||||||||||||| |||| | ||| ||||||||||||||||||||| |  | | || |||| || ||||||||||||||| |||||||| ||  |||||    
T  6818803 tgactaatacctcaaattcgtccttgaattttaaaaaatcggccaaactcgtccctggatttagcaaaatatctatttagtccctgaattttacagacgt 6818704  T
Q  501 ccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||    
T  6818703 ccatcaaaatggtccctccgtccaaaagctccgttagtggtgatga 6818658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 406 - 545
Target Start/End: Complemental strand, 34778262 - 34778118
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattata--gacgtc 501  Q
    ||||||||||||| |||| | ||| ||||||||||||||||||||||   | | |||||||||||||||||| | ||||| |||||||| ||  || |||    
T  34778262 gactaatacctcaaattcgtccttgaattttaaaaaatcggccaaatacgtccctgaattttgcgaaatatcaaattagtccctgaattttacagatgtc 34778163  T
Q  502 catcaaaatggtcca-ccgtccaaaagccccgttagtggtgatga 545  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||    
T  34778162 catcaaaatggtccctccgtccaaaagctccgttagtggtgatga 34778118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 406 - 548
Target Start/End: Original strand, 2869579 - 2869726
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| |||||| ||||||||| ||||||  | | ||||||||||||||||||||||||||  || ||  ||| |||||||    
T  2869579 gactaatacctcaaattcgtccttgaattttcaaaaatcggtcaaattcgtccctgaattttgcgaaatatctatttagtctctaaattttacagacgtc 2869678  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||| || |||||||||||| | |||||||||||||||||    
T  2869679 catcaaaatggtccctccgtccaaaagctctgttagtggtgatgatgt 2869726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 403 - 548
Target Start/End: Complemental strand, 51896279 - 51896129
Alignment:
Q  403 tttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatttt--catgaattttgcgaaatatctatttagttcctgaa--ttatagac 498  Q
    ||||||| |||||||| || | | |||||||||||||||||| | |||||||   | |||||||||||||||||||||||||| ||||||  ||| |||     
T  51896279 tttgactgatacctcaaatccgtccttaaattttaaaaaatcagtcaaatttgtccctgaattttgcgaaatatctatttagtccctgaattttacagat 51896180  T
Q  499 gtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||| || || |||||||||||| | |||||||||||||||||    
T  51896179 gtccatcaaaatagtccctccgtccaaaagctctgttagtggtgatgatgt 51896129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 15104495 - 15104588
Alignment:
Q  458 tgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggtcc-accgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||||||||||||||||| ||||||  ||| |||||||||||||||||||||  |||||||||||| || ||||||||||||||||    
T  15104495 tgaattttgcgaaatatctatttagtccctgaattttacagacgtccatcaaaatggtccttccgtccaaaagctccattagtggtgatgatgt 15104588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 406 - 545
Target Start/End: Original strand, 37344342 - 37344486
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| |||||||||||||||| ||||||  | | |||||||||||||||| |||||||||   ||||  ||| | |||||    
T  37344342 gactaatacctcaaattcgtccttgaattttaaaaaatcggtcaaattcgtccctgaattttgcgaaatacctatttagtctttgaattttacatacgtc 37344441  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||| || |||||||||||| ||||||||||||||||    
T  37344442 catcaaaatggtccctccgtccaaaagctccgttagtggtgatga 37344486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 403 - 492
Target Start/End: Original strand, 31236816 - 31236907
Alignment:
Q  403 tttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatttt--catgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||||| |||| | ||| |||||||||||||||| |||||||   | |||||||||||||||||||||||||||||||||||    
T  31236816 tttgactaatacctcaaattcgtccttgaattttaaaaaatcggtcaaatttgtccctgaattttgcgaaatatctatttagttcctgaatt 31236907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 405 - 548
Target Start/End: Complemental strand, 3013601 - 3013447
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgt 500  Q
    |||||||||||||| |||| | ||| |||||||||| ||| | ||||||  | |||||||||||||||||||||||||||| ||||||  ||| ||||||    
T  3013601 tgactaatacctcaaattcgtccttgaattttaaaacatcagtcaaattcgtccatgaattttgcgaaatatctatttagtccctgaattttacagacgt 3013502  T
Q  501 c------catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |      ||||||||| || || |||||||||||| |||||||||||||||||||    
T  3013501 ccatggacatcaaaatagtccctccgtccaaaagctccgttagtggtgatgatgt 3013447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 399 - 544
Target Start/End: Complemental strand, 50556228 - 50556078
Alignment:
Q  399 taaatttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttat 494  Q
    |||||| |||||||| |||| |||| |  || |||||||||||||| | ||||||  |   |||||||||||||||||||||||||| ||| ||  |||     
T  50556228 taaattagactaatatctcaaattcgtctttgaattttaaaaaatcagtcaaattcgtctctgaattttgcgaaatatctatttagtccctaaattttac 50556129  T
Q  495 agacgtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatg 544  Q
    ||||||| ||||||||||| || |||||||||||| |||||||||||||||    
T  50556128 agacgtctatcaaaatggtccctccgtccaaaagctccgttagtggtgatg 50556078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 409 - 492
Target Start/End: Original strand, 3011858 - 3011943
Alignment:
Q  409 taatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||| |||| | |||||||||||||||||| | ||||||  ||| ||||||||||||||||||||||||||  |||||||    
T  3011858 taatacctcaaattcgtccttaaattttaaaaaatcagtcaaattcgttcctgaattttgcgaaatatctatttagtctctgaatt 3011943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 492
Target Start/End: Complemental strand, 25279078 - 25278989
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||| |||| | ||| |||||| ||||||| ||||||||  ||| | |||||||||||||||||||||||| ||||||||    
T  25279078 tgactaatacctcaaattcgtccttgaattttcaaaaatcagccaaattcgttcctaaattttgcgaaatatctatttagtccctgaatt 25278989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 480
Target Start/End: Complemental strand, 37088226 - 37088149
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctattt 480  Q
    |||||||||||||| |||| | ||| |||||||||||||||||||||||  ||| |||||||||||||||| ||||||    
T  37088226 tgactaatacctcaaattcttccttgaattttaaaaaatcggccaaattcgttcctgaattttgcgaaatagctattt 37088149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 548
Target Start/End: Complemental strand, 46583681 - 46583533
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatttt--catgaattttgcgaaatatctatttagttcctgaa--ttatagacgt 500  Q
    |||||||||||||| |||| | ||| |||||| ||||||||| ||| |||   | |||||||||||||||||| | ||||| ||||||  ||| ||||||    
T  46583681 tgactaatacctcaaattcgtccttgaattttgaaaaatcggtcaattttgtccctgaattttgcgaaatatcaaattagtccctgaattttacagacgt 46583582  T
Q  501 ccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||| | || || |||||||||||  |||||| ||||||||||||    
T  46583581 ccatcaaatttgtccctccgtccaaaaggtccgttaatggtgatgatgt 46583533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 483
Target Start/End: Original strand, 25278852 - 25278933
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagt 483  Q
    ||||||||||||||| |||||| ||| |||||| ||||||| | ||||||  | | ||||||||||||||||||||||||||    
T  25278852 ttgactaatacctcaaattcatccttgaattttcaaaaatcagtcaaatttgtccctgaattttgcgaaatatctatttagt 25278933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 492
Target Start/End: Original strand, 25276739 - 25276830
Alignment:
Q  403 tttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  25276739 tttgactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcatccttgaattttgcgaaatatcaaattagtccctgaatt 25276830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 492
Target Start/End: Original strand, 50554164 - 50554251
Alignment:
Q  407 actaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||| |||| | ||| |||||||||||||||| ||||||  | | |||||||||  ||||| ||||||||||||||||||    
T  50554164 actaatacctcaaattcgtccttgaattttaaaaaatcggtcaaattcgtccctgaattttgtaaaatagctatttagttcctgaatt 50554251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 492
Target Start/End: Original strand, 51894570 - 51894655
Alignment:
Q  409 taatacctcatattcattcttaaattttaaaaaatcggccaaattt-tca-tgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||| ||| |||| ||||| ||||||||||||| || ||||||| ||  ||||||||||||||||| |||||||| ||||||||    
T  51894570 taatacatcaaattcgttcttgaattttaaaaaatgggtcaaatttgtctctgaattttgcgaaatatatatttagtccctgaatt 51894655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 492
Target Start/End: Original strand, 26223584 - 26223675
Alignment:
Q  403 tttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||||| |||| | ||| |||||| ||||||||| ||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  26223584 tttgactaatacctcaaattcgtccttgaattttgaaaaatcggtcaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 26223675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 483
Target Start/End: Original strand, 52641888 - 52641967
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagt 483  Q
    ||||||||||||| |||| | ||| |||||| ||||||| ||||||||  | | ||||||||||||||||| ||||||||    
T  52641888 gactaatacctcaaattcgtccttgaattttcaaaaatcagccaaattcgtccctgaattttgcgaaatatatatttagt 52641967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 34776569 - 34776657
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||| ||||||||| | ||||| ||||||||    
T  34776569 gactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttacgaaatatcaaattagtccctgaatt 34776657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 37346051 - 37345963
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| |||||||| |||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  37346051 gactaatacctcaaattcgtccttgaattttgaaaaatcgaccaatttcatccctgaattttgcgaaatatcaaattagtccctgaatt 37345963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 46582010 - 46582098
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||  | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  46582010 gactaatacctcaaatttgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 46582098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 404 - 545
Target Start/End: Original strand, 17574316 - 17574462
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacg 499  Q
    ||||||||||||||| |||| | ||| |||||||||||||||||||||||  | | |||||||||||||||||||||||||| ||||||  ||| |||||    
T  17574316 ttgactaatacctcaaattcgtccttgaattttaaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacagacg 17574415  T
Q  500 tccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||||| || |||||||||||| ||||||||||||||||    
T  17574416 tccatcaaaatggtccctccgtccaaaagctccgttagtggtgatga 17574462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 406 - 545
Target Start/End: Original strand, 7267843 - 7267987
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaattt-tca-tgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| ||||||||||||||| |||||||  ||| |||||||||||||||||||||||||| ||||||  ||| |||||||    
T  7267843 gactaatacctcaaattcgtccttgaattttaaaaaatcgtccaaattcgtcactgaattttgcgaaatatctatttagtccctgaattttacagacgtc 7267942  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||| | || |||||||||||| ||||||||||||||||    
T  7267943 catcaaaatgatccctccgtccaaaagctccgttagtggtgatga 7267987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 406 - 548
Target Start/End: Complemental strand, 36057737 - 36057590
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||||||  | | |||||||||||||||||||||||||  ||||||  ||| |||||||    
T  36057737 gactaatacctcaaattcgtccttgaattttcaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagaccctgaattttacagacgtc 36057638  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||| || |||||||||||| |||||| ||||||||||||    
T  36057637 catcaaaatggtccctccgtccaaaagctccgttaatggtgatgatgt 36057590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 406 - 548
Target Start/End: Original strand, 34327635 - 34327782
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| ||||||  ||||| |||||||||  |   |||||||||||||||||||||||||| ||||||  ||| |||||||    
T  34327635 gactaatacctcaaattcgtccttgaattttctaaaattggccaaattcgtcgctgaattttgcgaaatatctatttagtccctgaattttacagacgtc 34327734  T
Q  502 catcaaaatggtc-caccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||||| | |||||||||||| | |||||||||||||||||    
T  34327735 catcaaaatggtctctccgtccaaaagctctgttagtggtgatgatgt 34327782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 404 - 492
Target Start/End: Complemental strand, 12738827 - 12738737
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||||| |||| | ||| |||||||||||||||||||||||  | | |||||||||||||||||||||||||| ||||||||    
T  12738827 ttgactaatacctcaaattcgtccttgaattttaaaaaatcggccaaattcgtacctgaattttgcgaaatatctatttagtccctgaatt 12738737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 404 - 492
Target Start/End: Complemental strand, 12801650 - 12801560
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||||| |||| | ||| |||||||||||||||||||||||  | | |||||||||||||||||||||||||| ||||||||    
T  12801650 ttgactaatacctcaaattcgtccttgaattttaaaaaatcggccaaattcgtacctgaattttgcgaaatatctatttagtccctgaatt 12801560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 406 - 545
Target Start/End: Original strand, 2179787 - 2179931
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||  | ||| |||||||||||||||| ||||||  | | ||||||||| |||||||||||||| | ||||||  ||| |||| ||    
T  2179787 gactaatacctcaaatttgtccttgaattttaaaaaatcggtcaaattcgtccctgaattttgtgaaatatctatttaatccctgaattttacagacatc 2179886  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||| || |||||||||||| || |||||||||||||    
T  2179887 catcaaaatggtccctccgtccaaaagctccattagtggtgatga 2179931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 460 - 545
Target Start/End: Complemental strand, 30468348 - 30468260
Alignment:
Q  460 aattttgcgaaatatctatttagttcctgaattata--gacgtccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||||||||||||||| | |||||| ||  ||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  30468348 aattttgcgaaatatctatttagtccttgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatga 30468260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 400 - 544
Target Start/End: Original strand, 8539669 - 8539818
Alignment:
Q  400 aaatttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttata 495  Q
    |||| |||||||||||||| |||| | ||| |||||| |||||||   ||||||  ||| |||||||||||||||||||||||||| ||||||  ||| |    
T  8539669 aaatatgactaatacctcaaattcgtccttgaattttgaaaaatcaatcaaattcgttcttgaattttgcgaaatatctatttagtccctgaattttaca 8539768  T
Q  496 gacgtccatcaaaatggtc-caccgtccaaaagccccgttagtggtgatg 544  Q
     |||||||||||||| ||| | || ||||||||| ||||||||| |||||    
T  8539769 aacgtccatcaaaatagtcgctccatccaaaagctccgttagtgttgatg 8539818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 18625078 - 18624985
Alignment:
Q  458 tgaattttgcgaaatatctatttagttcctgaattataga--cgtccatcaaaatggtcc-accgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||| |||||||||||||||| |||||||| || |  ||||||||||||||||||  |||||||||||| |||||||| ||||||||||    
T  18625078 tgaattttgtgaaatatctatttagtccctgaattttacactcgtccatcaaaatggtccttccgtccaaaagctccgttagtagtgatgatgt 18624985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 30463900 - 30463988
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||||||||||||| ||||||  | | |||||||||||||||||||||||||| ||||||||    
T  30463900 gactaatacctcaaattcgtccttgaattttaaaaaatcggtcaaattcgtccctgaattttgcgaaatatctatttagtccctgaatt 30463988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 8541360 - 8541272
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| |  || |||||||||||||||||||||||  | | |||||||||||||||||||||||||| | ||||||    
T  8541360 gactaatacctcaaattcgtcattgaattttaaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagtccttgaatt 8541272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 2852886 - 2852974
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||||||||||||| ||| ||  | | |||||||||||||||||| | ||||||||||||||    
T  2852886 gactaatacctcaaattcgtccttgaattttaaaaaatcggtcaatttcgtccctgaattttgcgaaatatcaaattagttcctgaatt 2852974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 492
Target Start/End: Complemental strand, 28813858 - 28813766
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaa--tcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||||| |||| | ||| ||||| ||||||  | |||||||||  | | |||||||||||||||||||||||||| ||||||||    
T  28813858 ttgactaatacctcaaattcgtccttgaatttaaaaaaaaattggccaaattcgtccttgaattttgcgaaatatctatttagtccctgaatt 28813766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 21843081 - 21842993
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatttt--catgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||| ||| |||   |||||||||||||||||||| | ||||| ||||||||    
T  21843081 gactaatacctcaaattcgtccttgaattttgaaaaatcggtcaattttgtccatgaattttgcgaaatatcaaattagtccctgaatt 21842993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 508
Target Start/End: Complemental strand, 24541337 - 24541230
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgt 500  Q
    |||||||||||||| |||| |  || |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||  ||| ||||||    
T  24541337 tgactaatacctcaaattcgtcattgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaattttacagacgt 24541238  T
Q  501 ccatcaaa 508  Q
    ||||||||    
T  24541237 ccatcaaa 24541230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 492
Target Start/End: Complemental strand, 43492201 - 43492134
Alignment:
Q  427 cttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||| ||||||| ||||| ||  | | |||||||||||||||||||||||||| ||||||||    
T  43492201 cttaaattttcaaaaatcagccaagttcatccctgaattttgcgaaatatctatttagtccctgaatt 43492134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 492
Target Start/End: Complemental strand, 7269536 - 7269447
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||| |||| |  || ||||||||||||||||| || ||  | | |||||||||||||||||| | ||||| ||||||||    
T  7269536 tgactaatacctcaaattcgtctttgaattttaaaaaatcggctaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 7269447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 35395389 - 35395446
Alignment:
Q  460 aattttgcgaaatatctatttagttcctgaatt--atagacgtccatcaaaatggtcc 515  Q
    |||| ||||||||||| ||||||||||||||||   |||||||||||||||| |||||    
T  35395389 aattatgcgaaatatcaatttagttcctgaatttgttagacgtccatcaaaaaggtcc 35395446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 480
Target Start/End: Complemental strand, 34328916 - 34328840
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctattt 480  Q
    ||||||||||||| |||| | ||| |||||| ||||||||| ||||||  | |||||||||||| ||||| ||||||    
T  34328916 gactaatacctcaaattcgtccttgaattttcaaaaatcggtcaaattcgtccatgaattttgcaaaatagctattt 34328840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 404 - 545
Target Start/End: Complemental strand, 34777041 - 34776895
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacg 499  Q
    |||| |||||||||| |||| ||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||| ||||||  ||| |||||    
T  34777041 ttgattaatacctcaaattcgttcttaaattttaaaaaattggccaaattcattcctgaattttgcgaaatatctatttagtccctgaattttacagacg 34776942  T
Q  500 tccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||||| || |||||||||| | ||||||||| ||||||    
T  34776941 tccatcaaaatggtccctccgtccaaaaactccgttagtgatgatga 34776895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 406 - 545
Target Start/End: Complemental strand, 39859353 - 39859209
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| |||||||||||||||||||||||  | | |||||||||||||||||||||||||| | ||||  ||| |||||||    
T  39859353 gactaatacctcaaattcgtccttgaattttaaaaaatcggccaaattagtccctgaattttgcgaaatatctatttagtccttgaattttacagacgtc 39859254  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    | |||||||||| || |||||||||||| ||||||||||||||||    
T  39859253 cgtcaaaatggtccctccgtccaaaagctccgttagtggtgatga 39859209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 431 - 545
Target Start/End: Original strand, 13168145 - 13168267
Alignment:
Q  431 aattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagt---tcctgaa--ttatagacgtccatcaaaatggtcca-ccgtcc 522  Q
    |||||||||||||||||||||||  | | ||||||||||||||||||||||||||   |||||||  ||| |||||||||||||||||||||| ||||||    
T  13168145 aattttaaaaaatcggccaaattcgtccttgaattttgcgaaatatctatttagtccctcctgaattttacagacgtccatcaaaatggtccatccgtcc 13168244  T
Q  523 aaaagccccgttagtggtgatga 545  Q
    |||||| ||||||||||||||||    
T  13168245 aaaagctccgttagtggtgatga 13168267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 406 - 548
Target Start/End: Complemental strand, 37115650 - 37115503
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattata--gacgtc 501  Q
    ||||||||||||| |||| |  || |||||||||||||| | ||||||  ||| |||||||||| ||||||||||||||| |||||||| ||  ||||||    
T  37115650 gactaatacctcaaattcgtcattgaattttaaaaaatcagtcaaattcgttcctgaattttgcaaaatatctatttagtacctgaattttacagacgtc 37115551  T
Q  502 catcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||| ||||  |||||||||||| |||||||||||||||||||    
T  37115550 catcaaaatagtccctccgtccaaaagctccgttagtggtgatgatgt 37115503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 406 - 545
Target Start/End: Original strand, 6602335 - 6602479
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatttt--catgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    |||||||| |||| ||||   ||| ||||||||||||||||| ||| ||   | |||||||||||||||||||||||||| ||||||  ||| |||||||    
T  6602335 gactaataactcaaattcgaccttgaattttaaaaaatcggctaaacttatccctgaattttgcgaaatatctatttagtccctgaattttacagacgtc 6602434  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||| || |||||||||||| ||||||||||||||||    
T  6602435 catcaaaatggtccctccgtccaaaagctccgttagtggtgatga 6602479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 409 - 548
Target Start/End: Complemental strand, 24228530 - 24228386
Alignment:
Q  409 taatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccat 504  Q
    ||||||||||  ||| ||||| ||||||||||||| |||||||||  | | ||||||||||||||||||||||||||  |||||  ||| ||||||||||    
T  24228530 taatacctcaatttcgttcttgaattttaaaaaattggccaaattcgtccctgaattttgcgaaatatctatttagtctctgaattttacagacgtccat 24228431  T
Q  505 caaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||| ||  ||||||||||| || ||||||||||||||||    
T  24228430 caaaatggtcccttcgtccaaaagctccattagtggtgatgatgt 24228386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 405 - 548
Target Start/End: Complemental strand, 47386334 - 47386186
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattata--gacgt 500  Q
    |||||||||||||| |||| | ||| |||||||||||||| | ||||||  | | ||||||||||||||||| ||||||||  || |||| ||  |||||    
T  47386334 tgactaatacctcaaattcgtcctttaattttaaaaaatcagtcaaattcgtccttgaattttgcgaaatatttatttagtctctaaattttacagacgt 47386235  T
Q  501 ccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||||||   |||||||||||| |||||||||||||||||||    
T  47386234 ccatcaaaatggtcattccgtccaaaagctccgttagtggtgatgatgt 47386186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 406 - 548
Target Start/End: Complemental strand, 30940549 - 30940402
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattataga--cgtc 501  Q
    ||||||||||| | |||  ||||| |||||||||||||||||||||||  |   | |||||| ||||||||||||||||| |||||||| || |  |||     
T  30940549 gactaataccttaaatttgttcttgaattttaaaaaatcggccaaattcgtctcttaattttacgaaatatctatttagtccctgaattttacaaacgtt 30940450  T
Q  502 catcaaaatggtc-caccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||||    
T  30940449 catcaaaatggtctctccgtccaaaagctccgttagtggtgatgatgt 30940402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 406 - 548
Target Start/End: Complemental strand, 38474267 - 38474120
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattata--gacgtc 501  Q
    ||||||||||||| |||  | ||  |||||| ||||||||| ||||||  | | |||||||||||||||||||||||||| | |||||| ||  |||| |    
T  38474267 gactaatacctcaaattagtcctcgaatttttaaaaatcggtcaaattcgtccctgaattttgcgaaatatctatttagtccttgaattttacagacgcc 38474168  T
Q  502 catcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
     |||||||||||||| |||||||||||| |||||||||||||||||||    
T  38474167 tatcaaaatggtccatccgtccaaaagctccgttagtggtgatgatgt 38474120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 431 - 545
Target Start/End: Original strand, 45359361 - 45359480
Alignment:
Q  431 aattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggt-ccaccgtccaaa 525  Q
    |||||||||||||||| |||||   | | |||||||||||||||||||||||||| | ||||  ||| ||||||||||||||||||| || || ||||||    
T  45359361 aattttaaaaaatcggtcaaatccgtccttgaattttgcgaaatatctatttagtccttgaattttacagacgtccatcaaaatggtccctccatccaaa 45359460  T
Q  526 agccccgttagtggtgatga 545  Q
    ||| ||||||||||||||||    
T  45359461 agctccgttagtggtgatga 45359480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 492
Target Start/End: Complemental strand, 13169773 - 13169684
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatttt--catgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||| |||| | ||| |||||| |||||||||||||||||   | |||||||||||||||||||||||||| ||||||||    
T  13169773 tgactaatacctcaaattcgtccttgaattttcaaaaatcggccaaatttgtccctgaattttgcgaaatatctatttagtccctgaatt 13169684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 399 - 492
Target Start/End: Complemental strand, 35403715 - 35403620
Alignment:
Q  399 taaatttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||||||||| |||| | ||| |||||||||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  35403715 taaatttgactaatacctcaaattcgtccttgaattttaaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 35403620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 492
Target Start/End: Complemental strand, 6605488 - 6605398
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaattt--tcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||| |||||||||| |||  | ||| |||||||||||||||| |||||||  || |||||||||||||||| ||||||||| ||||||||    
T  6605488 ttgattaatacctcaaatttgtccttgaattttaaaaaatcggtcaaatttgttcctgaattttgcgaaatagctatttagtccctgaatt 6605398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 548
Target Start/End: Complemental strand, 27666191 - 27666042
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattataga--cg 499  Q
    ||||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| |||||||| || |  ||    
T  27666191 ttgactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaattttacaaacg 27666092  T
Q  500 tccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||   ||||  ||||||||||| ||||||| | ||||||||||    
T  27666091 tccatcaaatccgtccctccgtccaaaaggcccgttaatagtgatgatgt 27666042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 492
Target Start/End: Original strand, 39857643 - 39857733
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||| |||||||||| |||| | ||| |||||||||||||||| ||||||  | | |||||||||||||||||||||||||| || |||||    
T  39857643 ttgattaatacctcaaattcgtccttgaattttaaaaaatcggtcaaattcgtccctgaattttgcgaaatatctatttagtcccagaatt 39857733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 34774998 - 34775086
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||| |||| |||| |  || |||||||||||||||| ||||||  |||||||||||||| ||||| ||||||||| ||||||||    
T  34774998 gactaatatctcaaattcgtctttgaattttaaaaaatcggtcaaattcattcatgaattttgcaaaatagctatttagtccctgaatt 34775086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 37113941 - 37114029
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| ||||||||||||| || ||||||  | | |||||||||||||||||||||||||| ||| ||||    
T  37113941 gactaatacctcaaattcgtccttgaattttaaaaaattggtcaaattcatccctgaattttgcgaaatatctatttagtccctaaatt 37114029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 536
Target Start/End: Complemental strand, 37796249 - 37796170
Alignment:
Q  460 aattttgcgaaatatctatttagttcctgaattata--gacgtccatcaaaatggt-ccaccgtccaaaagccccgttag 536  Q
    |||||||||||||||||||||||| |||||||| ||  ||||||||||||||| || || ||||||| |||| |||||||    
T  37796249 aattttgcgaaatatctatttagtccctgaattttacggacgtccatcaaaatagtccctccgtccataagctccgttag 37796170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 548
Target Start/End: Complemental strand, 48852415 - 48852324
Alignment:
Q  460 aattttgcgaaatatctatttagttcctgaattata--gacgtccatcaaaatggtc-caccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||| ||||||||||||| | | |||||| ||  ||||||||||||||||||| | | |||||||||| | |||||||||||||||||    
T  48852415 aattttgcaaaatatctatttaatccttgaattttacagacgtccatcaaaatggtctctcggtccaaaagctctgttagtggtgatgatgt 48852324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 480
Target Start/End: Original strand, 24226582 - 24226657
Alignment:
Q  407 actaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctattt 480  Q
    |||||||||||| |||| | ||| |||||| ||||||||||||||||  | | |||||||||||||||| ||||||    
T  24226582 actaatacctcaaattcgtccttgaattttcaaaaatcggccaaattcgtccttgaattttgcgaaatagctattt 24226657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 507
Target Start/End: Original strand, 56330 - 56435
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| |||||| |||||||||| || ||  | | |||||||||||||||||| | ||||| ||||||  ||| |||||||    
T  56330 gactaatacctcaaattcgtccttgaattttgaaaaatcggcaaatttcgtccctgaattttgcgaaatatcaaattagtccctgaattttacagacgtc 56429  T
Q  502 catcaa 507  Q
    ||||||    
T  56430 catcaa 56435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 492
Target Start/End: Complemental strand, 22155938 - 22155848
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |  ||| | ||| |||||| ||||||||||||||||  | |||||||||||| ||||| |||||| || ||||||||    
T  22155938 ttgactaatacctaaacttcgtccttgaattttcaaaaatcggccaaattcgtccatgaattttgcaaaatagctattttgtccctgaatt 22155848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 492
Target Start/End: Complemental strand, 22211853 - 22211763
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |  ||| | ||| |||||| ||||||||||||||||  | |||||||||||| ||||| |||||| || ||||||||    
T  22211853 ttgactaatacctaaacttcgtccttgaattttcaaaaatcggccaaattcgtccatgaattttgcaaaatagctattttgtccctgaatt 22211763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 453
Target Start/End: Complemental strand, 23906356 - 23906309
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt 453  Q
    ||||||||||||| |||| | ||| |||||||||||||||||||||||    
T  23906356 gactaatacctcaaattcctccttgaattttaaaaaatcggccaaatt 23906309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 35693442 - 35693347
Alignment:
Q  458 tgaattttgcgaaatatctat--ttagttcctgaattata--gacgtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||| ||||||| |  ||||| |||||||| ||  |||||||||||||||||| || || ||||||||  | |||||||||||||||||    
T  35693442 tgaattttgcggaatatctctaattagtccctgaattttacagacgtccatcaaaatggtccctccatccaaaagttctgttagtggtgatgatgt 35693347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 47384294 - 47384382
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||  ||||||||  | | |||||||||||||||||||| ||||| || |||||    
T  47384294 gactaatacctcaaattcgtccttgaattttgaaaaatgagccaaattcgtccttgaattttgcgaaatatctaattagtccccgaatt 47384382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 13018036 - 13018080
Alignment:
Q  409 taatacctcatattcattcttaaattttaaaaaatcggccaaatt 453  Q
    |||||||||| |||||| ||| |||||||||||||| ||||||||    
T  13018036 taatacctcaaattcatccttgaattttaaaaaatcagccaaatt 13018080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 508
Target Start/End: Complemental strand, 29996638 - 29996532
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| |||||| ||||||||| ||| ||  | | |||||||||||||||||| | ||| | ||||||  ||| |||||||    
T  29996638 gactaatacctcaaattcgtccttgaattttgaaaaatcggtcaattttgtccctgaattttgcgaaatatcaaattaatccctgaattttacagacgtc 29996539  T
Q  502 catcaaa 508  Q
    |||||||    
T  29996538 catcaaa 29996532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 405 - 548
Target Start/End: Complemental strand, 39664893 - 39664745
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattata--gacgt 500  Q
    |||||||||||||| |||| | ||| |||||||||||||||||||||||  | |  ||||||| ||||||||||||||||| |||||||| ||  |||||    
T  39664893 tgactaatacctcaaattcgtccttgaattttaaaaaatcggccaaattcgtccccgaattttacgaaatatctatttagtccctgaattttacagacgt 39664794  T
Q  501 ccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||||||  |||||||||||| |||||||||||||||||||    
T  39664793 ccatcaaaatggtccctccgtccaaaagctccgttagtggtgatgatgt 39664745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 404 - 546
Target Start/End: Complemental strand, 44709891 - 44709744
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatttt--catgaattttgcgaaatatctatttagttcctgaa--ttatagacg 499  Q
    ||||||||||||||| |||| | ||| |||||||||||| ||||||||||    | |||||||||||||||| ||||||||| ||||||  ||| |||||    
T  44709891 ttgactaatacctcaaattcgtccttgaattttaaaaaaccggccaaattcggccctgaattttgcgaaataactatttagtccctgaattttacagacg 44709792  T
Q  500 tccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgat 546  Q
    |||||||||||||| || ||||||||||||  ||||||||||||||||    
T  44709791 tccatcaaaatggtccctccgtccaaaagcttcgttagtggtgatgat 44709744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 406 - 545
Target Start/End: Complemental strand, 19908391 - 19908246
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaa-tcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgt 500  Q
    ||||||||||||| |||| | ||| |||||||||||| |||||||||||  | | |||||||||||||||||||||||||| | ||||  ||| ||||||    
T  19908391 gactaatacctcaaattcgtccttgaattttaaaaaaatcggccaaattagtccctgaattttgcgaaatatctatttagtccttgaattttacagacgt 19908292  T
Q  501 ccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    || |||||||||| || |||||||||||| ||||||||||||||||    
T  19908291 ccgtcaaaatggtccctccgtccaaaagctccgttagtggtgatga 19908246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 405 - 545
Target Start/End: Original strand, 16763075 - 16763220
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgt 500  Q
    |||||||||||||| |||| | ||| |||||| ||||||||| ||||||  | | |||||||||||||||||||||||||| ||||||  ||| ||||||    
T  16763075 tgactaatacctcaaattcgtccttgaatttttaaaaatcggtcaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacagacgt 16763174  T
Q  501 ccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    ||||||||||||| || |||||||||| | | |||||||| |||||    
T  16763175 ccatcaaaatggtccctccgtccaaaatctctgttagtggcgatga 16763220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 400 - 548
Target Start/End: Original strand, 17696200 - 17696353
Alignment:
Q  400 aaatttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattataga 497  Q
    ||||| || |||||||||| |||| | ||| |||||| ||||||||||||||||  | | |||||||||  ||||||||||||||| |||||||| || |    
T  17696200 aaattagattaatacctcaaattcgtccttgaattttcaaaaatcggccaaattcatccctgaattttggaaaatatctatttagtccctgaattttaca 17696299  T
Q  498 --cgtccatcaaaatggtc-caccgtccaaaagccccgttagtggtgatgatgt 548  Q
      |||| |||||||||||| | |||||||||||| |||||||||||||||||||    
T  17696300 aacgtcaatcaaaatggtcactccgtccaaaagctccgttagtggtgatgatgt 17696353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 404 - 548
Target Start/End: Original strand, 40560221 - 40560370
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacg 499  Q
    ||||||||||| ||| |||| |  || |||||||||||||| ||||||||  | | |||||||||||||||||||||||||| ||||||  ||| |||||    
T  40560221 ttgactaatacttcaaattcgtctttgaattttaaaaaatcagccaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacagacg 40560320  T
Q  500 tccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||| || || |||||||||||  | |||||||||||||||||    
T  40560321 tccatcaaaatagtccctccgtccaaaagttctgttagtggtgatgatgt 40560370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 405 - 548
Target Start/End: Original strand, 2766933 - 2767081
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgt 500  Q
    ||||||||| |||| |||| | ||| |||||| ||||||||| |||| |  | | |||||||||||||||||||||||||| ||||||  ||| ||||||    
T  2766933 tgactaatagctcaaattcgtccttgaatttttaaaaatcggtcaaactcgtccttgaattttgcgaaatatctatttagtccctgaattttacagacgt 2767032  T
Q  501 ccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    | ||||||||||| || | |||||||||| |||||||||||||||||||    
T  2767033 ctatcaaaatggtccctctgtccaaaagctccgttagtggtgatgatgt 2767081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 400 - 548
Target Start/End: Complemental strand, 14389234 - 14389081
Alignment:
Q  400 aaatttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattat--a 495  Q
    |||| |||||||||||||| |||| |  || |||||| ||||||||||||||||  | | |||||||||||||||||||||||||| |||||||| |  |    
T  14389234 aaatatgactaatacctcaaattcgtcattgaattttcaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttcca 14389135  T
Q  496 gacgtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
     | ||||||||||||||| || |||||||||||   ||||||| ||||||||||    
T  14389134 aatgtccatcaaaatggtccctccgtccaaaagtttcgttagtagtgatgatgt 14389081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 406 - 548
Target Start/End: Original strand, 6797507 - 6797654
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||| | ||||||  || ||||||||||||| ||| |||||  ||| |||||||||||||||||||||||||| ||| ||  ||| |||||||    
T  6797507 gactaataccttaaattcatatttgaattttaaaaaattggctaaattcgttcctgaattttgcgaaatatctatttagtcccttaattttacagacgtc 6797606  T
Q  502 catcaaaatgg-tccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
     |||||||||| ||| |||||||||||| | ||||  |||||||||||    
T  6797607 tatcaaaatggttcctccgtccaaaagctctgttacgggtgatgatgt 6797654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 548
Target Start/End: Original strand, 39455168 - 39455316
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaattt--tcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgt 500  Q
    ||||||||| |||| |||  | ||| ||||||||||||||||  |||||   || |||||||||| ||||||||||||||| | ||||  ||| ||||||    
T  39455168 tgactaatatctcaaatttgtccttgaattttaaaaaatcggttaaattcagtcctgaattttgcaaaatatctatttagtccatgaattttacagacgt 39455267  T
Q  501 ccatcaaaatggtc-caccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||||| | |||| ||||||| |||||||||| ||||||||    
T  39455268 ccatcaaaatggtctctccgttcaaaagctccgttagtggcgatgatgt 39455316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 410 - 548
Target Start/End: Complemental strand, 42519346 - 42519202
Alignment:
Q  410 aatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaa-ttttgcgaaatatctatttagttcctgaa--ttatagacgtccat 504  Q
    ||||||||| |||| | ||| ||||||||||||| |  ||||||  | | |||| |||||| ||||||||||||||| ||||||  ||| ||||||||||    
T  42519346 aatacctcaaattcgtccttgaattttaaaaaattgatcaaattagtccttgaatttttgcaaaatatctatttagtccctgaattttacagacgtccat 42519247  T
Q  505 caaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||| || || ||||||||| |||||||||||||||||||    
T  42519246 caaaatggtccctccatccaaaagctccgttagtggtgatgatgt 42519202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 458 - 545
Target Start/End: Complemental strand, 16377287 - 16377197
Alignment:
Q  458 tgaattttgcgaaatatctatttagttcctgaattataga--cgtccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||| ||||||||||||||| | |||||| || |  ||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  16377287 tgaattttgcaaaatatctatttagtccttgaattttacatacgtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatga 16377197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 406 - 483
Target Start/End: Original strand, 19581414 - 19581493
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagt 483  Q
    ||||||||||||| |||| | |||||||||| ||||||| ||||||||  | | ||||||||||||||||||||||||||    
T  19581414 gactaatacctcaaattcgtccttaaatttttaaaaatcagccaaatttgtccctgaattttgcgaaatatctatttagt 19581493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 480
Target Start/End: Original strand, 34400314 - 34400390
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctattt 480  Q
    ||||||||||||| |||||| ||| |||||| ||||||||||||||||  | | |||||||||||||||| ||||||    
T  34400314 gactaatacctcaaattcatccttgaattttcaaaaatcggccaaattcatccctgaattttgcgaaatagctattt 34400390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 492
Target Start/End: Original strand, 16376733 - 16376824
Alignment:
Q  403 tttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||||| |||| |  || |||||||||||||||| ||||||  | | |||||||| ||||||| ||||||||| ||||||||    
T  16376733 tttgactaatacctcaaattcgtctttgaattttaaaaaatcggtcaaattcgtccctgaattttacgaaatagctatttagtccctgaatt 16376824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 483
Target Start/End: Original strand, 19906685 - 19906761
Alignment:
Q  409 taatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagt 483  Q
    |||||||| | |||| | ||| |||||||||||||||| ||||||  | | ||||||||||||||||||||||||||    
T  19906685 taataccttaaattcgtccttgaattttaaaaaatcggtcaaattcgtccctgaattttgcgaaatatctatttagt 19906761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 39456869 - 39456781
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||| ||| |||||| ||| ||||||||||||| ||  |||||  | |||||||||||| ||||| ||||||||| ||||||||    
T  39456869 gactaatacttcaaattcatccttgaattttaaaaaattggttaaattcgtccatgaattttgcaaaatagctatttagtccctgaatt 39456781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 492
Target Start/End: Complemental strand, 16764702 - 16764612
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||||| |||| | ||| |||||| | ||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  16764702 ttgactaatacctcaaattcgtccttgaattttgagaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 16764612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 14387349 - 14387437
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||| ||||||||| | ||||| ||||||||    
T  14387349 gactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttacgaaatatcaaattagtccctgaatt 14387437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 39663154 - 39663242
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||| | |||| | ||| |||||| ||||||||| ||||||  | | |||||||||| ||||| ||||||||| ||||||||    
T  39663154 gactaatacctaaaattcgtccttgaatttttaaaaatcggtcaaattcgtccctgaattttgcaaaatagctatttagtccctgaatt 39663242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 408 - 545
Target Start/End: Original strand, 8264 - 8404
Alignment:
Q  408 ctaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaattatagacgtccatc 505  Q
    ||||||||||| |||| | ||| ||||||||||||| |||||||||  ||| |||||||||| ||||||||||||||| |||||||| || |||||||||    
T  8264 ctaatacctcaaattcgtccttgaattttaaaaaattggccaaattcgttcttgaattttgcaaaatatctatttagtccctgaattttatacgtccatc 8363  T
Q  506 aaaatggtcca-ccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||| || ||||||||||||  |||||||||||||||    
T  8364 aaaatggtacatccgtccaaaagcttcgttagtggtgatga 8404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 406 - 545
Target Start/End: Complemental strand, 35404569 - 35404425
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||||| ||| ||||||||||||||||| |||||  | | | ||||||||||||||| |||||| | ||||||  ||| |||||||    
T  35404569 gactaatacctcagattcatacttgaattttaaaaaatcggctaaattcgtccttcaattttgcgaaatatttatttaatccctgaattttacagacgtc 35404470  T
Q  502 catcaaaatggtcca-ccgtccaaaagccccgttagtggtgatga 545  Q
    || |||||||||||| |||||||||||| ||||||||||||||||    
T  35404469 caacaaaatggtccatccgtccaaaagctccgttagtggtgatga 35404425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 407 - 548
Target Start/End: Original strand, 49523125 - 49523271
Alignment:
Q  407 actaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtcc 502  Q
    |||||||||||| |||| |  || ||||||||||||||||| |||||  | |||||||||||||||||||||||||||| ||||||  ||| |||||| |    
T  49523125 actaatacctcaaattcgtcattgaattttaaaaaatcggctaaattcgtccatgaattttgcgaaatatctatttagtccctgaattttacagacgttc 49523224  T
Q  503 atcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||| || ||||||||||   |||||||||||||||||||    
T  49523225 atcaaaatggtccctccgtccaaaaaatccgttagtggtgatgatgt 49523271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 409 - 548
Target Start/End: Complemental strand, 41761867 - 41761723
Alignment:
Q  409 taatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccat 504  Q
    |||||||||| |||| | ||| |||||| ||||||||||||||||  | |   |||||||||||||||||||||||| ||||||  ||| ||||||||||    
T  41761867 taatacctcaaattcgtccttgaattttcaaaaatcggccaaattcgtcccgaaattttgcgaaatatctatttagtccctgaattttacagacgtccat 41761768  T
Q  505 caaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||| || ||||||||||||  ||||||||||||||||||    
T  41761767 caaaatggtccctccgtccaaaagcttcgttagtggtgatgatgt 41761723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 405 - 548
Target Start/End: Original strand, 41781538 - 41781686
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgt 500  Q
    |||||||||||||| |||  ||||| |||||||||||||||| ||||||  | | |||||||||| |||||| |||||||| ||||||  ||| |||| |    
T  41781538 tgactaatacctcaaatttgttcttgaattttaaaaaatcggtcaaatttgtccctgaattttgcaaaatatttatttagtccctgaattttacagacat 41781637  T
Q  501 ccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||||| || |||||||||||| ||||||||| |||||||||    
T  41781638 ccatcaaaatggtccctccgtccaaaagctccgttagtgatgatgatgt 41781686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 406 - 545
Target Start/End: Original strand, 51011926 - 51012070
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    |||||||| |||| |||| | ||| |||||||||||||||| ||||||  ||| ||||||||||||||||||||||||||  |||||  ||| |||||||    
T  51011926 gactaatatctcaaattcgtccttgaattttaaaaaatcggtcaaattctttcttgaattttgcgaaatatctatttagtctctgaattttacagacgtc 51012025  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||| || |||||||||||| | |||||| |||||||    
T  51012026 catcaaaatggtccctccgtccaaaagctctgttagtagtgatga 51012070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 406 - 548
Target Start/End: Original strand, 48813787 - 48813934
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatttt--catgaattttgcgaaatatctatttagttcctgaa--ttatagacgtc 501  Q
    ||||||||||||| |||| | ||| |||||| ||||||| |||||||||   | |||||||||| |||||| |||||||||||||||  |||||||||||    
T  48813787 gactaatacctcaaattcgtccttgaattttcaaaaatcagccaaatttatccctgaattttgcaaaatatatatttagttcctgaattttatagacgtc 48813886  T
Q  502 catcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||| ||  ||||||||||| | ||| |||||||||||||    
T  48813887 catcaaaatggtcccttcgtccaaaagctctgttggtggtgatgatgt 48813934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 405 - 492
Target Start/End: Original strand, 20493826 - 20493915
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||| |||| |  || |||||||||| ||||||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  20493826 tgactaatacctcaaattcgtcattgaattttaaaatatcggccaaattcgttcttgaattttgcgaaatatctatttagttcctgaatt 20493915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 456 - 548
Target Start/End: Original strand, 42980687 - 42980782
Alignment:
Q  456 catgaattttgcgaaatatctatttagttcctgaattata--gacgtccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||| |||||| |||||||||| ||| |||| ||  ||||||||||||||||||||  |||||||||||| | |||||||||||||||||    
T  42980687 catgaattttacgaaatttctatttagtcccttaattttacagacgtccatcaaaatggtccctccgtccaaaagctctgttagtggtgatgatgt 42980782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 404 - 492
Target Start/End: Original strand, 35401747 - 35401837
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||||| |||| | ||| |||||||||||||||||||||||  | | ||||||||| |||||||||||||||| | ||||||    
T  35401747 ttgactaatacctcaaattcgtccttgaattttaaaaaatcggccaaattcgtccctgaattttgtgaaatatctatttagtccttgaatt 35401837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 48646817 - 48646724
Alignment:
Q  458 tgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggtcc-accgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||| |||||||||||||||||| ||||||  ||| |||| | ||||||||||||||  ||||||||||||  ||||||||||||||||||    
T  48646817 tgaatttagcgaaatatctatttagtccctgaattttacagaccttcatcaaaatggtccttccgtccaaaagcttcgttagtggtgatgatgt 48646724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 548
Target Start/End: Complemental strand, 2693351 - 2693230
Alignment:
Q  431 aattttaaaaaatcggccaaattt--tcatgaattttgcgaaatatctatttagttcctgaattat-agacgtccatcaaaatggtcca-ccgtccaaaa 526  Q
    |||||||||||||| |||||||||  || | ||||||||||||||||||||||||   |||||| | | | |||||||||||||||||| ||||||| ||    
T  2693351 aattttaaaaaatcagccaaatttattcctaaattttgcgaaatatctatttagtctttgaattttaaaatgtccatcaaaatggtccatccgtccataa 2693252  T
Q  527 gccccgttagtggtgatgatgt 548  Q
    |  || |||||| |||||||||    
T  2693251 gttccattagtgatgatgatgt 2693230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 492
Target Start/End: Complemental strand, 49524823 - 49524734
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||| |||| | ||| |||||||||||||||| ||||||  | | |||||||||| ||||| ||||||||| ||||||||    
T  49524823 tgactaatacctcaaattcgtccttgaattttaaaaaatcggtcaaattcgtccctgaattttgcaaaatagctatttagtccctgaatt 49524734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 431 - 545
Target Start/End: Complemental strand, 52868248 - 52868129
Alignment:
Q  431 aattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt--atagacgtccatcaaaatggtc-caccgtccaaa 525  Q
    |||||||||||||||| ||||||  |  || ||||||||||||||||||||||||  |||||||  | ||||| | |||||||||||| |  ||||||||    
T  52868248 aattttaaaaaatcggtcaaattcgtctataaattttgcgaaatatctatttagtctctgaatttaacagacgcctatcaaaatggtcacttcgtccaaa 52868149  T
Q  526 agccccgttagtggtgatga 545  Q
    ||| |||||||||| |||||    
T  52868148 agctccgttagtggcgatga 52868129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 492
Target Start/End: Original strand, 39345589 - 39345652
Alignment:
Q  431 aattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||||||||||||  | | |||||||||||||||| ||||||||| ||||||||    
T  39345589 aattttaaaaaatcggccaaattcgtccctgaattttgcgaaatagctatttagtccctgaatt 39345652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 483
Target Start/End: Original strand, 48645255 - 48645334
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagt 483  Q
    ||||||||||||| |||| | ||| |||||| ||||||| | ||||||  | ||||||||||||||||||||||||||||    
T  48645255 gactaatacctcaaattcgtccttgaattttcaaaaatcagtcaaattcgtccatgaattttgcgaaatatctatttagt 48645334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 492
Target Start/End: Original strand, 43507166 - 43507255
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  43507166 tgactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 43507255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 319273 - 319361
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||| ||| ||  | | |||||||||||||||||| | ||||||||||||||    
T  319273 gactaatacctcaaattcgtccttgaattttgaaaaatcggtcaatttcgtccctgaattttgcgaaatatcaaattagttcctgaatt 319361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 4173829 - 4173741
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  4173829 gactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 4173741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 33266099 - 33266011
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    |||||||| |||| |||| ||||| |||||| |||||||||| || ||  ||| |||||||||||||||||| | ||||| ||||||||    
T  33266099 gactaatatctcaaattcgttcttgaattttgaaaaatcggctaatttcgttcctgaattttgcgaaatatcaaattagtccctgaatt 33266011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 43508742 - 43508654
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  43508742 gactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 43508654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 43519424 - 43519512
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  43519424 gactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 43519512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 475
Target Start/End: Complemental strand, 320990 - 320918
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatc 475  Q
    |||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | ||||||||||||||||||    
T  320990 tgactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcatccttgaattttgcgaaatatc 320918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 33264382 - 33264470
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||| ||| ||  | | |||||||||| ||||||| | ||||||||||||||    
T  33264382 gactaatacctcaaattcgtccttgaattttgaaaaatcggtcaatttcgtccctgaattttgcaaaatatcaaattagttcctgaatt 33264470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 9398714 - 9398807
Alignment:
Q  458 tgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||||||||||||||||| ||||||  |||||||||| |||||||||||| || |||||||||||  |||||||||||||||||||    
T  9398714 tgaattttgcgaaatatctatttagtccctgaattttatagacgttcatcaaaatggtccctccgtccaaaagttccgttagtggtgatgatgt 9398807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 431 - 548
Target Start/End: Original strand, 20523391 - 20523513
Alignment:
Q  431 aattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggt-ccaccgtccaaa 525  Q
    |||||| ||||||||| ||||||  | | |||||||||||||||||||||||||| ||||||  ||| ||||||||||||||||||| || |||||||||    
T  20523391 aattttcaaaaatcggtcaaattcgtccttgaattttgcgaaatatctatttagtccctgaattttacagacgtccatcaaaatggtccctccgtccaaa 20523490  T
Q  526 agccccgttagtggtgatgatgt 548  Q
    ||  | |||||||||||||||||    
T  20523491 agttctgttagtggtgatgatgt 20523513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 405 - 545
Target Start/End: Complemental strand, 32439216 - 32439071
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgt 500  Q
    |||||||||||||| |||  |  || |||||||||||||||| ||||||  | | |||||||||||||||||||||||||| ||||||  ||| ||||||    
T  32439216 tgactaatacctcaaattagtcattgaattttaaaaaatcggtcaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacagacgt 32439117  T
Q  501 ccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    ||||||||||||| || |||||||||||  | |||||| |||||||    
T  32439116 ccatcaaaatggtccctccgtccaaaagatctgttagtagtgatga 32439071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 7373028 - 7372935
Alignment:
Q  458 tgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||||||||| |||||||| ||||||  ||| || |||||||||||||||| || |||||||||||| || ||||||||||||||||    
T  7373028 tgaattttgcgaaatatttatttagtccctgaattttacaggcgtccatcaaaatggtccctccgtccaaaagctccattagtggtgatgatgt 7372935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 403 - 545
Target Start/End: Original strand, 32516874 - 32517021
Alignment:
Q  403 tttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagac 498  Q
    |||||||||||||||| |||| | ||| |||||||||||||||| ||||||  | | |||||||| | ||||| ||||||||  | ||||  ||| | ||    
T  32516874 tttgactaatacctcaaattcgtccttgaattttaaaaaatcggtcaaattcgtccctgaattttacaaaatacctatttagcccttgaattttacatac 32516973  T
Q  499 gtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    |||||||||||| || || |||||||||||| ||||||||||||||||    
T  32516974 gtccatcaaaattgtccctccgtccaaaagctccgttagtggtgatga 32517021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 10568453 - 10568546
Alignment:
Q  458 tgaattttgcgaaatatctatttagttcctgaattata--gacgtccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||| ||||||||| |||||||| |||||||| ||  |||||| |||||||| ||||  |||||||||||| |||||||||||||||||||    
T  10568453 tgaatttagcgaaatatttatttagtccctgaattttacagacgtctatcaaaatagtccctccgtccaaaagctccgttagtggtgatgatgt 10568546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 548
Target Start/End: Complemental strand, 13613707 - 13613559
Alignment:
Q  405 tgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgt 500  Q
    |||||||||||| | |||| | ||| |||||| ||||||||| ||||||  | | |||||||||||||||||| | ||||| ||||||  ||| ||||||    
T  13613707 tgactaataccttaaattcgtccttgaattttgaaaaatcggtcaaattcgtccctgaattttgcgaaatatcaaattagtccctgaattttacagacgt 13613608  T
Q  501 ccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||| | || || |||||||||||  || ||||||||||||||||    
T  13613607 ccatcaaattagtccctccgtccaaaaggtccattagtggtgatgatgt 13613559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 406 - 483
Target Start/End: Complemental strand, 10570008 - 10569929
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagt 483  Q
    ||||||||||||| |||| | ||| |||||||||||||| ||||||||  | |||||||||||| |||||||||||||||    
T  10570008 gactaatacctcaaattcgtccttgaattttaaaaaatcagccaaattcgtccatgaattttgcaaaatatctatttagt 10569929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 407 - 545
Target Start/End: Original strand, 11355223 - 11355366
Alignment:
Q  407 actaatacctcatattcattcttaaattttaaaaaatcggccaaatt-ttca-tgaattttgcgaaatatctatttagttcctgaa--ttatagacgtcc 502  Q
    |||||||||||| |||| | ||| |||||||||||||||| ||||||  ||| ||||||||  |||||||||||| | | ||||||  ||| ||||| ||    
T  11355223 actaatacctcaaattcgtccttgaattttaaaaaatcggtcaaattcgtcactgaattttatgaaatatctattaactccctgaattttacagacggcc 11355322  T
Q  503 atcaaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    | ||||||||| || |||||||||||| ||| ||||||||||||    
T  11355323 accaaaatggtccctccgtccaaaagctccggtagtggtgatga 11355366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 548
Target Start/End: Original strand, 6899541 - 6899632
Alignment:
Q  460 aattttgcgaaatatctatttagttcctgaattata--gacgtccatcaaaatggtccac-cgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||| |||||||||||||||| ||| |||| ||  ||| ||||||||||||||||   ||||||||||| ||||||||| |||||||||    
T  6899541 aattttgtgaaatatctatttagtccctaaattttacagacatccatcaaaatggtcccttcgtccaaaagctccgttagtgttgatgatgt 6899632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 548
Target Start/End: Original strand, 7049850 - 7049904
Alignment:
Q  495 agacgtccatcaaaatggtcca-ccgtccaaaagccccgttagtggtgatgatgt 548  Q
    |||||||||||||||||||||  |||||||||||| ||||| |||||||||||||    
T  7049850 agacgtccatcaaaatggtccctccgtccaaaagctccgttcgtggtgatgatgt 7049904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 32518586 - 32518498
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||||    
T  32518586 gactaatacctcaaattcgtccttgaattttgaaaaatcggccaatttcatccctgaattttgcgaaatatcaaattagtccctgaatt 32518498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 473
Target Start/End: Original strand, 7371172 - 7371244
Alignment:
Q  403 tttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaata 473  Q
    ||||||||||||||||  ||| | ||| |||||| ||||||||||||||||  | | ||||||||||||||||    
T  7371172 tttgactaatacctcaacttcgtccttgaattttcaaaaatcggccaaattggtccctgaattttgcgaaata 7371244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 9400124 - 9400036
Alignment:
Q  406 gactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||| |||| | ||| |||||| ||||||| | ||||||  | | |||||||||||||||||||| ||||| || |||||    
T  9400124 gactaatacctcaaattcgtccttgaattttgaaaaatcagtcaaattcatccttgaattttgcgaaatatctaattagtccccgaatt 9400036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 548
Target Start/End: Complemental strand, 14338543 - 14338452
Alignment:
Q  460 aattttgcgaaatatctatttagttcctgaatt--atagacgtccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||||||| |||| ||  | ||||||||  | ||||||||||||||||||| || |||| ||||||| |||||| || |||||||||    
T  14338543 aattttgcgaaatgtctaattcatccctgaatttcacagacgtccatcaaaatggtccctccgttcaaaagctccgttactgatgatgatgt 14338452  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 33267117 - 33267149
Alignment:
Q  460 aattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||||||||||||||||| |||||    
T  33267117 aattttgcgaaatatctatttagttcccgaatt 33267149  T

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Target: scaffold1454 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 409 - 545
Target Start/End: Original strand, 1266 - 1407
Alignment:
Q  409 taatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacgtccat 504  Q
    |||||||||| || | | ||| ||||||||||||| ||  |||||  | ||||||||||  |||||||||||||||| ||||||  ||| ||||||||||    
T  1266 taatacctcaaatccgtccttgaattttaaaaaattggttaaattcgtccatgaattttatgaaatatctatttagtccctgaattttacagacgtccat 1365  T
Q  505 caaaatggt-ccaccgtccaaaagccccgttagtggtgatga 545  Q
    ||||||||| || |||||||||||| ||||||||||||||||    
T  1366 caaaatggtccctccgtccaaaagctccgttagtggtgatga 1407  T

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Target: scaffold0058 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 404 - 548
Target Start/End: Original strand, 3292 - 3441
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacg 499  Q
    ||||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||  ||| |||||    
T  3292 ttgactaatacctcaaattcgtccttgaattttgaaaaatcggccaattttgtccctgaattttgcgaaatatcaaattagtccctgaattttacagacg 3391  T
Q  500 tccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||| | || || |||||||||||  |||||| | ||||||||||    
T  3392 tccatcaaattcgtccctccgtccaaaaggtccgttaatagtgatgatgt 3441  T

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Target: scaffold0058; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 404 - 548
Target Start/End: Original strand, 4464 - 4613
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaa--ttatagacg 499  Q
    ||||||||||||||| |||| | ||| |||||| ||||||||||||| ||  | | |||||||||||||||||| | ||||| ||||||  ||| |||||    
T  4464 ttgactaatacctcaaattcgtccttgaattttgaaaaatcggccaattttgtccctgaattttgcgaaatatcaaattagtccctgaattttacagacg 4563  T
Q  500 tccatcaaaatggt-ccaccgtccaaaagccccgttagtggtgatgatgt 548  Q
    ||||||||| | || || |||||||||||  |||||| | ||||||||||    
T  4564 tccatcaaattcgtccctccgtccaaaaggtccgttaatagtgatgatgt 4613  T

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Target: scaffold0058; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 492
Target Start/End: Complemental strand, 14434 - 14344
Alignment:
Q  404 ttgactaatacctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctatttagttcctgaatt 492  Q
    ||||||||||||||| |||| | ||| |||||| |||||||||| || ||  | | |||||||||||||||||| | ||||| ||||||||    
T  14434 ttgactaatacctcaaattcgtccttgaattttgaaaaatcggcaaatttcgtccctgaattttgcgaaatatcaaattagtccctgaatt 14344  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 480
Target Start/End: Original strand, 436272 - 436341
Alignment:
Q  413 acctcatattcattcttaaattttaaaaaatcggccaaatt--ttcatgaattttgcgaaatatctattt 480  Q
    |||||| |||| ||||| |||||| ||||||| ||||||||  | ||| |||||||||||||||||||||    
T  436272 acctcaaattcgttcttgaattttcaaaaatcagccaaattcatccataaattttgcgaaatatctattt 436341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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