View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_high_21 (Length: 277)
Name: NF3439_high_21
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 5925447 - 5925196
Alignment:
| Q |
12 |
tgaaatcatatgacaactcgaaaaagagttatgcattatcaacttttggaacaaaaataataaaagtgttgttgattacattcaccaatctcccattagc |
111 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| |
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| T |
5925447 |
tgaaatcatatgacaactcggaaaagggttatgcattatcaacttttggaacaaaaataataaaagtgtcgttgactacattcaccaatctcctattagc |
5925348 |
T |
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| Q |
112 |
atggacttcggtcaagaatctcatagaatttcccttaaacttaaaattcagttaagaaatcgaaattgacatcatatgaacatgaacttttgcaggtatc |
211 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5925347 |
atggacttcggtcaagaatctcataaaattccccttaaacttaaaattctgttaagaaatcgaaattgacatcatatgaacctgaacttttgcaggtatc |
5925248 |
T |
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| Q |
212 |
acattcccacagcacatgtttatcttcctcttcactaaaagaaagaaccaac |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5925247 |
acattcccacagcacatgtttatcttcctcttcactaaaagaaagaaccaac |
5925196 |
T |
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