View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_high_3 (Length: 531)
Name: NF3439_high_3
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 5 - 531
Target Start/End: Original strand, 39262990 - 39263516
Alignment:
| Q |
5 |
tgtcgaagaatataaaattggtagagaaacagcaacaagtgcacgtgaacctttgtatacaaacttcgagggcctcaatgtaattgcaaaccacccattg |
104 |
Q |
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| T |
39262990 |
tgtccaagtatataaaattggtagagaaacagcaagaagtgcacgtgaacctttgtatacaaacttcgagggcctcaatgtaattgcaaaccacccattg |
39263089 |
T |
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| Q |
105 |
tttcactgtcagtagctgaggccaaaatctttcatttaaaacagagataacaacaaagagaggagaagaaaagaatcaaataatgggtttgacaactaga |
204 |
Q |
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| T |
39263090 |
tttcaatgtcagtagctgaggccaaaatctttcatttaaaacagaggtaacaacaaagagaggagaagaaaagaatcaaataatgggtttgacaactaga |
39263189 |
T |
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| Q |
205 |
agagagtagaggaatcagtgagnnnnnnngagtttaaatcaaaaaacaacaacctttgcaacaaatgaagatgcagggctgtgaggttgaagccattggc |
304 |
Q |
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| T |
39263190 |
agagagtagaggaatcagtgagaaaaaaagagtttaaatcaaaaaacaacaacctttgcaacaaatgaagatgcagggctgtgaggttgaagtcattggc |
39263289 |
T |
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| Q |
305 |
ataaactacaaaatccacacaaacaaagcagaacacccttttaaaatcttcagcaaatctccacaactagtaaatactaatggtcaagaaacagaagaag |
404 |
Q |
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| T |
39263290 |
ataaactacaaaatccacacaaacaaagcagaacacccttttaaaatcttcagcaaatctccacaactagtaaatactaatgttcaagaaacagaagaag |
39263389 |
T |
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| Q |
405 |
ttgaaaaaggttgcagtggagttaggcatgtactcaagaatgtgagtttccaagccagaccatgggaaattctagcaattgttggaccaagtggagctgg |
504 |
Q |
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| T |
39263390 |
ttgaaaaaggttgcagtggagttaggcatgtactcaagaatgtgagtttccaagccagaccatgggaaattctagcaattgttggaccaagtggagctgg |
39263489 |
T |
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| Q |
505 |
aaaatcatcacttcttgagatcctagc |
531 |
Q |
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| T |
39263490 |
aaaatcatcacttcttgagatcctagc |
39263516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 525
Target Start/End: Original strand, 44067129 - 44067234
Alignment:
| Q |
420 |
gtggagttaggcatgtactcaagaatgtgagtttccaagccagaccatgggaaattctagcaattgttggaccaagtggagctggaaaatcatcacttct |
519 |
Q |
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||||||||| |||||| |||||| |||| | || | ||||| ||||| |||||||| ||||||||||| ||||||||||| |||||||||||| | || |
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| T |
44067129 |
gtggagttaagcatgtcctcaaggatgttaattgcatagccaagccatgtgaaattcttgcaattgttgggccaagtggagcaggaaaatcatcattgct |
44067228 |
T |
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| Q |
520 |
tgagat |
525 |
Q |
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| T |
44067229 |
tgagat |
44067234 |
T |
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