View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_high_31 (Length: 237)
Name: NF3439_high_31
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 43284196 - 43283983
Alignment:
| Q |
1 |
gtcattcacaccttctatttctactcaaaagccaattcaatgtaaatnnnnnnnttcttcattttataacactttcggtttgagtttgaaagagnnnnnn |
100 |
Q |
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| T |
43284196 |
gtcattcacaccttctatttctactcaaaagccaattcaatgtaaataaaaaaattcttcattttataacactttgggtttgagtttgaaagagaaaaaa |
43284097 |
T |
|
| Q |
101 |
nnnnnnnnnnnnntgaaatagtatctaggcaacaatataatgttcaagcaaaacaagataaaaatgagtcatatttatttaaatataacatcaatttatg |
200 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43284096 |
agtcacaaaaaaatgaaattgtatctaggcaacaat-----gttcaagcaaaacaagataaaaatgagtcatatttatttaaatataacatcaatttatg |
43284002 |
T |
|
| Q |
201 |
aaccatcatacatgtcacc |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
43284001 |
aaccatcatacatgtcacc |
43283983 |
T |
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