View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_high_5 (Length: 505)
Name: NF3439_high_5
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 6 - 497
Target Start/End: Original strand, 39039453 - 39039943
Alignment:
| Q |
6 |
ttctcttgcgatgatttccttatgctctacgcgagccgactgacttttgtagcaagcaatcacgtgaacaattttgggcatctatgataaggtccaagca |
105 |
Q |
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| T |
39039453 |
ttctcttgcgatgatttccttatgctctacgcgagccaactgacttttgtagcaagcaatcacgtgaacaattttgggcatctatgataaggtccaagca |
39039552 |
T |
|
| Q |
106 |
aataaatatgtgtttattctcaagcaaatgattggttccattctaagagatcaatgattatcggaccctattatgacgcctaacaatgggtcgtgatcca |
205 |
Q |
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| T |
39039553 |
aataaatatgtgtttattctcaagcaaatgattagttccattctaagagatcaatgattatcagaccctattatgacgcttaaaaatgggtcgtgatcca |
39039652 |
T |
|
| Q |
206 |
acaaaatgaggatgaagtatatgtatggtatcggtctcatgaccnnnnnnncttggccttgagatctattggtttattttcttcatcgtcttcattagag |
305 |
Q |
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| T |
39039653 |
acaaaataaggatgaagtatatgtatggtatcggtctcatgacc--tttttcttggccttgagatctattggtttattttcttcgtcgtcttcattagag |
39039750 |
T |
|
| Q |
306 |
acgactgtttcttcgagtccgacgttaaattcattagaataaatttaattttggtccttcaattgaagaacctaattaccaataatttaaaagtttaagg |
405 |
Q |
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| T |
39039751 |
acgaccgtttcttcgagtctgacgttaaattcattagaataaatttaattttggtccttcaattgaagaacctaattaccaataatttaaaagtttaagg |
39039850 |
T |
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| Q |
406 |
acac-aataaattgtttggttgaacgacataattacaaataaaattcaatcatactttataactctttaatttatatttcaagtgaatatatt |
497 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39039851 |
acacaaataaattgtttggttgaacgacataattacaaaaaaaattcaatcatactttataactctttaattcatatttcaagtgaatatatt |
39039943 |
T |
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