View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3439_low_11 (Length: 407)

Name: NF3439_low_11
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3439_low_11
NF3439_low_11
[»] chr2 (6 HSPs)
chr2 (175-301)||(9116193-9116319)
chr2 (19-147)||(9116073-9116201)
chr2 (299-375)||(9116414-9116489)
chr2 (299-381)||(9521075-9521156)
chr2 (331-381)||(27322734-27322784)
chr2 (331-381)||(33085400-33085450)
[»] chr7 (1 HSPs)
chr7 (299-381)||(30486961-30487042)
[»] chr5 (5 HSPs)
chr5 (303-381)||(24233161-24233238)
chr5 (323-381)||(28988425-28988483)
chr5 (323-381)||(21067601-21067659)
chr5 (331-381)||(24434102-24434152)
chr5 (322-375)||(36603728-36603781)
[»] chr1 (4 HSPs)
chr1 (303-381)||(34663095-34663172)
chr1 (299-381)||(32022625-32022706)
chr1 (331-381)||(19940640-19940690)
chr1 (299-380)||(48611740-48611822)
[»] scaffold0272 (1 HSPs)
scaffold0272 (322-381)||(6092-6151)
[»] chr4 (2 HSPs)
chr4 (303-374)||(19328813-19328883)
chr4 (322-372)||(3427860-3427910)
[»] chr3 (2 HSPs)
chr3 (322-374)||(42388732-42388784)
chr3 (299-381)||(8936091-8936172)
[»] chr8 (1 HSPs)
chr8 (299-381)||(9799261-9799342)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 9116193 - 9116319
Alignment:
Q  175 gtgctccaagtcaatattatataaaggggatcactttatgcattcatgtgatacttcatttggactgtttgattgagatcaaatgactcaaactagcttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9116193 gtgctccaagtcaatattatataaaggggatcactttatgcattcacgtgatacttcattttgactgtttgattgagatcaaatgactcaaactagcttt 9116292  T
Q  275 atattttggataaaatttataggcaat 301  Q
    |||||||||||| ||||||||||||||    
T  9116293 atattttggatacaatttataggcaat 9116319  T

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Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 9116073 - 9116201
Alignment:
Q  19 tttttcccatttggttttgcataaccctgcacaaagagtaacaatgtcaatatttggcttcaatttaaatgcaataatatatcactccttgtacttcata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||    
T  9116073 tttttcccatttggttttgcataaccctgcacaaagagtaacaatgtcaatattttgcttgaatttaaatgcaataatatatcactccttgtactttata 9116172  T
Q  119 tctctagcttagagattaaggtgctccaa 147  Q
    |||||||||||||||| ||||||||||||    
T  9116173 tctctagcttagagataaaggtgctccaa 9116201  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 299 - 375
Target Start/End: Original strand, 9116414 - 9116489
Alignment:
Q  299 aataaaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 375  Q
    |||||||||||| ||||||||||||||  |||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  9116414 aataaaagtaacactttgtatacttttc-aaaagttgacagcacaagttccaatgcaatatttaccacatttgactc 9116489  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 9521075 - 9521156
Alignment:
Q  299 aataaaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    |||||||||||| |||| |||||||||  |||||||||| ||||||||||||||| |||||||| |||||||||||| |||||    
T  9521075 aataaaagtaacactttttatacttttc-aaaagttgacagcacaagtttcaatgtaatacttatcacatttgactccttaac 9521156  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 27322784 - 27322734
Alignment:
Q  331 agttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  27322784 agttgacagcacaagttccaatgcaatacttaccacatttgactccttaac 27322734  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 33085400 - 33085450
Alignment:
Q  331 agttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    |||||||  ||||||||||| |||||||||||| |||||||| ||||||||    
T  33085400 agttgacatcacaagtttcattgcaatacttactacatttgaatctttaac 33085450  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 30486961 - 30487042
Alignment:
Q  299 aataaaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    ||||||||||||  ||| |||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||    
T  30486961 aataaaagtaacattttttatatttttt-aaaagttgacggcacaaatttcaatgcaatacttacgacatttgactccttaac 30487042  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 24233238 - 24233161
Alignment:
Q  303 aaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    |||||||| |||| |||| |||||||||||||||| ||||||||| ||||||||||||||  ||||||||||| |||||    
T  24233238 aaagtaacactttttata-tttttgaaaagttgacagcacaagttccaatgcaatacttattacatttgactccttaac 24233161  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 28988425 - 28988483
Alignment:
Q  323 ttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    |||||||||||||||| ||||| |||||||| |||| |||||||||||||||| |||||    
T  28988425 ttttgaaaagttgacgacacaaatttcaatgtaataattaccacatttgactccttaac 28988483  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 21067659 - 21067601
Alignment:
Q  323 ttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    ||||||| || ||||  |||||||||||||| ||||||||| ||||||||||| |||||    
T  21067659 ttttgaagagatgacaacacaagtttcaatgtaatacttactacatttgactccttaac 21067601  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 24434152 - 24434102
Alignment:
Q  331 agttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    |||||||  |||||||||||||||||| ||||| |||||||| ||||||||    
T  24434152 agttgacaacacaagtttcaatgcaatgcttactacatttgattctttaac 24434102  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 375
Target Start/End: Original strand, 36603728 - 36603781
Alignment:
Q  322 tttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 375  Q
    |||||||| |||||||  |||||||| |||||||||||||||  ||||||||||    
T  36603728 tttttgaagagttgacaacacaagttccaatgcaatacttactgcatttgactc 36603781  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 34663172 - 34663095
Alignment:
Q  303 aaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    |||||||| |||| ||||||||| ||||||||||| | ||||||| |||| |||||||||||||||||||||| |||||    
T  34663172 aaagtaacactttttatactttt-gaaaagttgacagtacaagttccaatacaatacttaccacatttgactccttaac 34663095  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 32022625 - 32022706
Alignment:
Q  299 aataaaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    |||||||||||  |||| |||||||||  |||||||||| | |||| |||||||| ||||||||||||||||||||| |||||    
T  32022625 aataaaagtaatactttttatactttta-aaaagttgacagtacaattttcaatgtaatacttaccacatttgactccttaac 32022706  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 19940640 - 19940690
Alignment:
Q  331 agttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    ||||||| ||| ||||||||||||||||||||| |||||||| || |||||    
T  19940640 agttgacagcataagtttcaatgcaatacttactacatttgattccttaac 19940690  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 380
Target Start/End: Original strand, 48611740 - 48611822
Alignment:
Q  299 aataaaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatact--taccacatttgactctttaa 380  Q
    |||||||||||| |||| ||||| |||||||||||| ||  |||||||| ||||| | ||||  ||| ||||||||||||||||    
T  48611740 aataaaagtaacactttttatac-ttttgaaaagttaacaacacaagttgcaatgtagtacttatactacatttgactctttaa 48611822  T

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Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 381
Target Start/End: Complemental strand, 6151 - 6092
Alignment:
Q  322 tttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    |||||||||||||||| ||| || || ||||||||||||||| ||||||||||| |||||    
T  6151 tttttgaaaagttgacagcataaattccaatgcaatacttactacatttgactccttaac 6092  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 19328883 - 19328813
Alignment:
Q  303 aaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgact 374  Q
    |||||||| |||| ||||||||| ||| ||||||  ||||||||| ||||| ||||||||||||||||||||    
T  19328883 aaagtaacactttttatactttt-gaagagttgatagcacaagttccaatgtaatacttaccacatttgact 19328813  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 3427910 - 3427860
Alignment:
Q  322 tttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttga 372  Q
    |||||||| |||||||  ||||||||||||| |||||||||| ||||||||    
T  3427910 tttttgaagagttgacaacacaagtttcaatacaatacttactacatttga 3427860  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 42388784 - 42388732
Alignment:
Q  322 tttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgact 374  Q
    |||||||||||||||| |||||| || |||| |||||||||| ||||||||||    
T  42388784 tttttgaaaagttgacagcacaaattccaatacaatacttactacatttgact 42388732  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 8936091 - 8936172
Alignment:
Q  299 aataaaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    |||||||||||| |||| ||| |||||  ||  |||||| ||||||||||||||| ||||||| |||||||| |||| |||||    
T  8936091 aataaaagtaacactttttatgcttttc-aagggttgacagcacaagtttcaatgtaatacttgccacatttaactccttaac 8936172  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 9799261 - 9799342
Alignment:
Q  299 aataaaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactctttaac 381  Q
    |||||| ||||| |||| |||||||||  || |||||||  |||||||| ||||| |||||||||||||||| |||| |||||    
T  9799261 aataaaggtaacactttttatacttttc-aagagttgacaacacaagttccaatgtaatacttaccacatttaactccttaac 9799342  T

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