View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_low_12 (Length: 398)
Name: NF3439_low_12
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 28438134 - 28437761
Alignment:
| Q |
20 |
ggtgcaacataccctttggttcctctaattccggttttagtgtgactttgattaatcagtaatagttttgctaaaccaaaatcggaaatcttagcattgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28438134 |
ggtgcaacataccctttggttcctctaattccggttttagtgtgactttgattaatcagtaatagttttgctaaaccgaaatcggaaatcttagcattgt |
28438035 |
T |
|
| Q |
120 |
aatcatcatctagaagtatgttttgtggctttatgtcacaatggatgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaattccggt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
28438034 |
aatcatcatctagaagtatgttttgtggctttatgtcacaatggatgatttgggtgcaacagtcctcatgcaagtaaataagacctcttgcaattccggt |
28437935 |
T |
|
| Q |
220 |
ggcaatttgaactcgttggttccaatttggtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgt |
319 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28437934 |
ggcaatttgaactcgttggttccaacttggtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacaccaaaatccggtgt |
28437835 |
T |
|
| Q |
320 |
tgatcgtcactgcaatacccatgaagacgaacaagattcctatgatgagtttcgagtatcacattcatctcagt |
393 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28437834 |
tgatcgtcactgcaatacccatgaagacgaacaagattcctatgatgagtttcgagtatcacattcatttcagt |
28437761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 28488190 - 28487816
Alignment:
| Q |
20 |
ggtgcaacataccctttggttcctctaattccggttttagtgtgactttgattaatcagtaatagttttgctaaaccaaaatcggaaatcttagcattgt |
119 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||| |||||| ||||||||||||| ||||| |||| ||| |||||||| |||||| | ||||||| |
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| T |
28488190 |
ggtgcaacatacccttttgttcctctaattccagtttcagtgtggctttgattaatcaacaatagctttgataatccaaaatctgaaatccttgcattgt |
28488091 |
T |
|
| Q |
120 |
aatcatcatctagaagtatgttttgtggctttatgtcacaatggatgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaattccggt |
219 |
Q |
| |
|
| | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
28488090 |
attgatcatctagaagtatattttgtggctttatatcacaatggatgatttgggtgcaacatccctcgtgcaagtaaacaagacctcttgcaattcccag |
28487991 |
T |
|
| Q |
220 |
ggcaatttgaactcgttggttccaatttggtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgt |
319 |
Q |
| |
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| ||| || ||||||||||||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||||| || || || || |||||||| ||| |
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| T |
28487990 |
gataatgtggactcgttggttccaatttggttttaaagaagtgaaaagaaagctcgctaaagttccattactcatgaactcgtataccaaaatccgatgt |
28487891 |
T |
|
| Q |
320 |
tgatcgtcactgcaatacccatgaagacgaacaagattcctatgatgagtttcgagtatcacattcatctcagtc |
394 |
Q |
| |
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|| | ||| |||| || ||| ||||||||||||||||||||||| |||||| | ||||||| |||| |||||| |
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|
| T |
28487890 |
tgtccctcattgcagtatccaagaagacgaacaagattcctatgaagagtttgggctatcacactcatttcagtc |
28487816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 28466429 - 28466055
Alignment:
| Q |
20 |
ggtgcaacataccctttggttcctctaattccggttttagtgtgactttgattaatcagtaatagttttgctaaaccaaaatcggaaatcttagcattgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| ||||| |||| ||| |||||||| |||||| | ||||||| |
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| T |
28466429 |
ggtgcaacataccctttggttcctctaattccagtttcagtgtggctttgattaatcaacaatagctttgataatccaaaatctgaaatccttgcattgt |
28466330 |
T |
|
| Q |
120 |
aatcatcatctagaagtatgttttgtggctttatgtcacaatggatgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaattccggt |
219 |
Q |
| |
|
| | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
28466329 |
attgatcatctagaagtatattttgtggctttatatcacaatggatgatttgggtgcaacatccctcatgcaagtaaacaagacctcttgcaatccccag |
28466230 |
T |
|
| Q |
220 |
ggcaatttgaactcgttggttccaatttggtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgt |
319 |
Q |
| |
|
| ||| || |||||||||||||||| |||||| || || |||||||| ||||| |||||||||||||||||||| || || || || |||||||| ||| |
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| T |
28466229 |
gataatgtggactcgttggttccaatctggttttaatggggtgaaaagaaagctcgctaaagtaccattactcatgaactcgtataccaaaatccgatgt |
28466130 |
T |
|
| Q |
320 |
tgatcgtcactgcaatacccatgaagacgaacaagattcctatgatgagtttcgagtatcacattcatctcagtc |
394 |
Q |
| |
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|| | ||| |||| || ||| ||||||||||||||||||||||| | |||| | ||||||| |||| |||||| |
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| T |
28466129 |
tgtccctcattgcagtatccaagaagacgaacaagattcctatgaagggtttgggctatcacactcatttcagtc |
28466055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 28445583 - 28445209
Alignment:
| Q |
20 |
ggtgcaacataccctttggttcctctaattccggttttagtgtgactttgattaatcagtaatagttttgctaaaccaaaatcggaaatcttagcattgt |
119 |
Q |
| |
|
||||||||||| || || |||||||| ||||| |||| || || ||||||||||||| |||| |||||||| |||||||| ||||| | ||||||| |
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|
| T |
28445583 |
ggtgcaacatatcccttagttcctcttattccagtttcggtatggctttgattaatcaacaataactttgctaatccaaaatctgaaattcttgcattgt |
28445484 |
T |
|
| Q |
120 |
aatcatcatctagaagtatgttttgtggctttatgtcacaatggatgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaattccggt |
219 |
Q |
| |
|
| | ||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| || |
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| T |
28445483 |
attgatcatctagaagtatattttgtggctttatatcgcaatggatgatttgggtgcaacacccctcgtgcaagtaaacaagacctcttgcaatccccag |
28445384 |
T |
|
| Q |
220 |
ggcaatttgaactcgttggttccaatttggtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgt |
319 |
Q |
| |
|
| ||| || |||||||||||||||| |||||| || || |||||||| ||||| |||||||| ||||||||||| || ||||| | ||||| || || |
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| T |
28445383 |
gataatgtggactcgttggttccaatctggttttaatggggtgaaaagaaagctagctaaagtgccattactcattaactcatatgccaaaatgcgatgc |
28445284 |
T |
|
| Q |
320 |
tgatcgtcactgcaatacccatgaagacgaacaagattcctatgatgagtttcgagtatcacattcatctcagtc |
394 |
Q |
| |
|
|| | || ||||||| ||| |||||||||||||||||||||||||||||| | ||||||| |||| |||||| |
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|
| T |
28445283 |
tgtccttcgttgcaatatccaagaagacgaacaagattcctatgatgagtttggcctatcacactcatttcagtc |
28445209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 3056730 - 3056654
Alignment:
| Q |
89 |
gctaaaccaaaatcggaaatcttagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggat |
165 |
Q |
| |
|
||||| |||||||| ||||| | |||||| ||| |||||| || ||||||||||| |||||||||||||||||||| |
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|
| T |
3056730 |
gctaatccaaaatcagaaattcttgcattgaaataatcatccaggagtatgttttgaggctttatgtcacaatggat |
3056654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 3070114 - 3070261
Alignment:
| Q |
21 |
gtgcaacataccctttggttcctctaattccggttttagtgtgactttgattaatcagtaatagttttgctaaaccaaaatcggaaatcttagcattgta |
120 |
Q |
| |
|
|||||||||||||||| |||||||| || || || || || | |||||||| || || || |||||||| |||||||| ||||| | |||||| | |
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|
| T |
3070114 |
gtgcaacatacccttttgttcctcttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgcattgaa |
3070213 |
T |
|
| Q |
121 |
atcatcatctagaagtatgttttgtggctttatgtcacaatggatgat |
168 |
Q |
| |
|
| |||||| || |||||||| || ||||||||||||||||||||||| |
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|
| T |
3070214 |
gtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgat |
3070261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 3035865 - 3035783
Alignment:
| Q |
86 |
tttgctaaaccaaaatcggaaatcttagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggatgat |
168 |
Q |
| |
|
|||||||| |||||||| ||||| | |||||| | | |||||| || ||||||||||| ||||||||||||||||| ||||| |
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|
| T |
3035865 |
tttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttttgaggctttatgtcacaatgaatgat |
3035783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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