View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3439_low_15 (Length: 341)

Name: NF3439_low_15
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3439_low_15
NF3439_low_15
[»] chr3 (1 HSPs)
chr3 (20-223)||(34128089-34128292)
[»] chr6 (11 HSPs)
chr6 (284-335)||(8842995-8843046)
chr6 (284-332)||(8527227-8527275)
chr6 (284-332)||(8541214-8541262)
chr6 (284-335)||(8647595-8647646)
chr6 (284-335)||(8514355-8514406)
chr6 (284-335)||(8830649-8830700)
chr6 (284-335)||(8834359-8834410)
chr6 (286-335)||(8548690-8548739)
chr6 (284-335)||(5082706-5082757)
chr6 (292-335)||(8507836-8507879)
chr6 (303-335)||(8627385-8627417)
[»] chr1 (1 HSPs)
chr1 (96-210)||(48558745-48558846)
[»] chr7 (1 HSPs)
chr7 (76-120)||(36747773-36747817)
[»] scaffold0155 (1 HSPs)
scaffold0155 (284-335)||(26201-26252)
[»] chr4 (1 HSPs)
chr4 (74-120)||(39077974-39078020)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 34128089 - 34128292
Alignment:
Q  20 agtccctagtgtcttgtcaatacataacatcaagaactaatgagatggagatttgtatactttagagacatcttattatttttatatactttagagacta 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  34128089 agtccctagtgtcttgtcaatacataacgtcaagaactaatgagatggagatttgtatactttagggacagcttattatttttatatactttagagacta 34128188  T
Q  120 agtcggagacaaagtgttactcgagggactaacttgaaggtttattcttattattgttgagtactttaaatatttttaacgttaaattaaatatttctct 219  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34128189 agtcggagacaaagtgttactcgagcgactaacttgaaggtttattcttattattgttgagtactttaaatatttttaacgttaaattaaatatttctca 34128288  T
Q  220 acaa 223  Q
    ||||    
T  34128289 acaa 34128292  T

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Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 8842995 - 8843046
Alignment:
Q  284 ctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttc 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8842995 ctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttc 8843046  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 8527227 - 8527275
Alignment:
Q  284 ctctcttgttggtgctttttattctatgtgttgcttcctccaattcaat 332  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8527227 ctctcttgttggtgcttttgattctatgtgttgcttcctccaattcaat 8527275  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 8541262 - 8541214
Alignment:
Q  284 ctctcttgttggtgctttttattctatgtgttgcttcctccaattcaat 332  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8541262 ctctcttgttggtgcttttgattctatgtgttgcttcctccaattcaat 8541214  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 8647646 - 8647595
Alignment:
Q  284 ctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttc 335  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  8647646 ctctcttgttgatgctttttgttctatgtgttgcttcctccaattcaatttc 8647595  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 8514355 - 8514406
Alignment:
Q  284 ctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttc 335  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||||||||||    
T  8514355 ctctcttgctggtgcttcttattctatgttttgcttcctccaattcaatttc 8514406  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 8830700 - 8830649
Alignment:
Q  284 ctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttc 335  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||| ||||    
T  8830700 ctctcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttc 8830649  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 8834410 - 8834359
Alignment:
Q  284 ctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttc 335  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||| ||||    
T  8834410 ctctcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttc 8834359  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 8548690 - 8548739
Alignment:
Q  286 ctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttc 335  Q
    |||||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  8548690 ctcttgttagtgcttcttattctatgtgttgcttccttcaattcaatttc 8548739  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 5082706 - 5082757
Alignment:
Q  284 ctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttc 335  Q
    |||||||||||||||||||| |||| |||||  |||||||||||||||||||    
T  5082706 ctctcttgttggtgctttttgttctctgtgtaacttcctccaattcaatttc 5082757  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 8507879 - 8507836
Alignment:
Q  292 ttggtgctttttattctatgtgttgcttcctccaattcaatttc 335  Q
    |||||| || ||||||||||||||||||||||||||||||||||    
T  8507879 ttggtgattcttattctatgtgttgcttcctccaattcaatttc 8507836  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 8627385 - 8627417
Alignment:
Q  303 tattctatgtgttgcttcctccaattcaatttc 335  Q
    |||||||||||||||||||||||||||||||||    
T  8627385 tattctatgtgttgcttcctccaattcaatttc 8627417  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 48558745 - 48558846
Alignment:
Q  96 tatttttatatactttagagactaagtcggagacaaagtgttactcgagggactaacttgaaggtttattcttattattgttgagtactttaaatatttt 195  Q
    |||||||||||||||||| |||||||| ||| | |  |||||||| ||||||||||||||||||||           ||||| |||||||||||||||||    
T  48558745 tatttttatatactttagggactaagtaggaaata--gtgttacttgagggactaacttgaaggtt-----------ttgttaagtactttaaatatttt 48558831  T
Q  196 taacgttaaattaaa 210  Q
    |||| ||||||||||    
T  48558832 taacattaaattaaa 48558846  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 36747817 - 36747773
Alignment:
Q  76 atactttagagacatcttattatttttatatactttagagactaa 120  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||    
T  36747817 atactttagagacaacttattatacttatatactttagagactaa 36747773  T

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Target: scaffold0155 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 26252 - 26201
Alignment:
Q  284 ctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttc 335  Q
    |||||||||| ||| || ||||||||||| || |||||||||||||||||||    
T  26252 ctctcttgttagtgtttgttattctatgtttttcttcctccaattcaatttc 26201  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 39078020 - 39077974
Alignment:
Q  74 gtatactttagagacatcttattatttttatatactttagagactaa 120  Q
    |||||||||||||||| ||||||||  ||||||| ||||||||||||    
T  39078020 gtatactttagagacaacttattatacttatataatttagagactaa 39077974  T

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