View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_low_16 (Length: 320)
Name: NF3439_low_16
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 5 - 269
Target Start/End: Complemental strand, 48173823 - 48173559
Alignment:
| Q |
5 |
ccaccaagtccatgccagattcccacatttagatttagataaaagtgttcagtttggtacttaagccataaggatggaagacacttacaaattcacaaag |
104 |
Q |
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| T |
48173823 |
ccaccaagtccatgccagattcccacatttagatttagataaaagtgttcagattaatacttaagccataaggatggaagacacttacaaattcacaaag |
48173724 |
T |
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| Q |
105 |
atcaaaagagtttgaaacaccaattgttacgaattaaacacatgacgtaagtatcgcactaaacatttttatctactgagtataggactcataacatcca |
204 |
Q |
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| T |
48173723 |
atcaaaagagtttgaaacaccaattgttacgaattaaacacatgacgtaagtatcgcactaaacatttttatctactgagtataggactcataacatcca |
48173624 |
T |
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| Q |
205 |
actttatcttaaccaaaccaatattattcaaaatacagcaagaccaacatatctaacactatagt |
269 |
Q |
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| T |
48173623 |
actttatcttaaccaaaccaatattattcaaaatacagcaagaccaacatatctaacactatagt |
48173559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 48173541 - 48173502
Alignment:
| Q |
264 |
tatagttatatggcatgacaatgtctattattacagtaac |
303 |
Q |
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| T |
48173541 |
tatagttatatagcatgacaatgtctattattatagtaac |
48173502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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