View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_low_19 (Length: 292)
Name: NF3439_low_19
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_low_19 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 6374419 - 6374702
Alignment:
| Q |
1 |
aggtttacagtcttgaaatctgcattggttccttgagtaccaaactgtgctaaagatgttaacaatggtggcctgtatcacagttttgcactgaggtgac |
100 |
Q |
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| T |
6374419 |
aggtttacagtcttgaaatctgcattggttccttgagtaccaaactgtgctaaagatgttaacaatggtggcatgtatcacagttttgcactgaggtgac |
6374518 |
T |
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| Q |
101 |
cagcctctatcataaatggtccaaatttcct-aattgattgaaaatgcagtgtagaatcaagaatggaagcaaaccagcaccaaatcatgaaaacaaact |
199 |
Q |
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| T |
6374519 |
catcctctatcacaaatggtccaaatgtcctcaattgattgaaaatgcagtgtagaatcaagaatggaagcaaaccagcaccaaatcatgaaaacaaact |
6374618 |
T |
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| Q |
200 |
tacatttaaagaacatgtcgaatgagttttcaacatttgataaacaaagagagcacatagatgagatatagtatcccctttgct |
283 |
Q |
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| T |
6374619 |
tacattcaaagaacaagtggaatgagttttcaacattagataaacaaagagagcacatagatgagatatagcatcccctttgct |
6374702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 16280 - 16092
Alignment:
| Q |
11 |
tcttgaaatctgcattggttccttgagtaccaaactgtgctaaagatgttaacaatggtggcctgtatcacagttttgcactgaggtgaccagcctctat |
110 |
Q |
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| T |
16280 |
tcttgaaatctgcattggtttctagcgtaccatattgtgctgaaaatattaacaatagaggctttaattactgttttgcactgtggtgaccaacatctat |
16181 |
T |
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| Q |
111 |
cataaatggtccaaatttcct-aattgattgaaaatgcagtgtagaatcaagaatggaagcaaaccagcaccaaatcatgaaaacaaac |
198 |
Q |
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| T |
16180 |
cacaaatggtccatatttcctcaatagattgaaaatgtaaagttgaatcaaggattgaggaaaaccagcaccaaatcatgaaagcaaac |
16092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 16490039 - 16489842
Alignment:
| Q |
16 |
aaatctgcattggttccttgagtaccaaactgtgctaaagatgttaacaatggtggcctgtatcacagttttgcactgaggtgaccagcctctatcataa |
115 |
Q |
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| T |
16490039 |
aaatctacattgattccttgagtaccaaattgttctgaagatattaacaatagtggcttgaatcactattttacactgtggagaccactgacgatcacaa |
16489940 |
T |
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| Q |
116 |
atggtccaaatttcct-aattgattgaaaatgcagtgtagaatcaagaatggaagcaaaccagcaccaaatcatgaaaacaaacttacatttaaagaa |
212 |
Q |
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| T |
16489939 |
atagtccagatatcctcaatagattggaaatgaagagatgtgtcaagaatagaagcaaaccaacaccatatcatgaaagaaaacttacattcaaagaa |
16489842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 28716407 - 28716210
Alignment:
| Q |
16 |
aaatctgcattggttccttgagtaccaaactgtgctaaagatgttaacaatggtggcctgtatcacagttttgcactgaggtgaccagcctctatcataa |
115 |
Q |
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|||||| ||||| |||||||||||||||| ||| || ||||| |||||||| ||||| || ||||| |||| ||||| || ||||| | |||| || |
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| T |
28716407 |
aaatctacattgattccttgagtaccaaattgtactgaagatattaacaatagtggcttgaatcactattttacactgtggagaccactgacgatcacaa |
28716308 |
T |
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| Q |
116 |
atggtccaaatttcct-aattgattgaaaatgcagtgtagaatcaagaatggaagcaaaccagcaccaaatcatgaaaacaaacttacatttaaagaa |
212 |
Q |
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| T |
28716307 |
atagtccagatatcctcaatagactggaaatgaagagatgtgtcaagaatagaagcaaaccaacaccatatcatgaaagaaaacttacattcaaagaa |
28716210 |
T |
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