View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_low_21 (Length: 290)
Name: NF3439_low_21
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 39263493 - 39263751
Alignment:
| Q |
12 |
atcatcacttcttgagatcctagcaggtaaacacagaccccaaaaagggtctgtgttgttgaaccagaagccagtagacaaatctcagttcagaaagcta |
111 |
Q |
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| T |
39263493 |
atcatcacttcttgagatcctagcaggtaaacacagaccacaaaaagggtctgtgttgttgaaccagaagccagtagacaaatctcagttcagaaagcta |
39263592 |
T |
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| Q |
112 |
tcaggatatgttactcaaaaggacactttgtttcccttacttacagttgaagaaaccatgatgttcagtgcaaaactaaggctaaagcttcctcaacaac |
211 |
Q |
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| T |
39263593 |
tcaggatatgttactcaaaaggacactttgtttcccttacttacagttgaagaaaccatgatgttcagtgcaaaactaaggctaaagcttcctcaacaac |
39263692 |
T |
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| Q |
212 |
aacaatgttcaagggtcaagtcactgattaaagagcttggacttgatcatgttgctggt |
270 |
Q |
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| T |
39263693 |
aacaatgttcaagggtcaagtcactgattaaagagcttggacttgatcatgttgctggt |
39263751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 44067299 - 44067398
Alignment:
| Q |
91 |
aaatctcagttcagaaagctatcaggatatgttactcaaaaggacactttgtttcccttacttacagttgaagaaaccatgatgttcagtgcaaaactaa |
190 |
Q |
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||||||||||||||||| | ||||| |||||||| ||||| ||||| | || |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44067299 |
aaatctcagttcagaaaaatttcagggtatgttacacaaaaagacacccttttccccttacttacagttgaagaaaccatgatgtttagtgcaaaactaa |
44067398 |
T |
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