View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_low_23 (Length: 269)
Name: NF3439_low_23
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 40092586 - 40092341
Alignment:
| Q |
10 |
aagaatatttggattcaaaagggtattcatttttcattgatccatttgctttcttcgtgttttgggatatgtatgaagatttagatgaagaatatgagct |
109 |
Q |
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| T |
40092586 |
aagaatatttggattcaaaagggtattcatttttcattgatccatttgctttcttcgtgttttgggatatgtatgaagatttagatgaagaatatgagct |
40092487 |
T |
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| Q |
110 |
agaataagattccattgtcctgatgtatgtttcagttttctaaagaagatataaaatatggtaaagtatatttttatttaatctgactttgaagaagtta |
209 |
Q |
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| T |
40092486 |
agaataagattccattgtcctgatgtatgtttcagttttctaaagaagatataaaatatggtaaagtatatttttatttaatctgactttgaagaagtta |
40092387 |
T |
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| Q |
210 |
ttatgattcaagag----taggttactattgtgttgtgctccattt |
251 |
Q |
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| T |
40092386 |
ttatgattcaagagagactaggttactattatgttgtgctccattt |
40092341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 40121409 - 40121292
Alignment:
| Q |
10 |
aagaatatttggattcaaaagggtattcatttttcattgatccatttgctttcttcgtgttttgggatatgtatgaagatttagatgaag---aatatga |
106 |
Q |
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| T |
40121409 |
aagaatatttggattcaaaagggtattcatttttcattgatccctttggtttcttagtgtttttggatatgtatgaagatttagatgaagaataatatga |
40121310 |
T |
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| Q |
107 |
gctagaataagattccat |
124 |
Q |
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| T |
40121309 |
gccagaataagactccat |
40121292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 40125040 - 40124962
Alignment:
| Q |
28 |
aagggtattcatttttcattgatccatttgctttcttcgtgttttgggatatgtatgaagatttagatgaagaatatga |
106 |
Q |
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| T |
40125040 |
aagggcattcatgtttaattgatccatttggtttcttagtgtttttggatatgtatgaagatttagatgaagaatatga |
40124962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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