View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_low_34 (Length: 236)
Name: NF3439_low_34
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30757380 - 30757159
Alignment:
| Q |
1 |
agtaaaaatacttctcttctttcactcccttctcttgctgaagataatgtgcttgttaatgcatatgatgcaaagaaaccttaagggcgtggtaaatgtt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30757380 |
agtaataatacttctcttctttcactcccttctcttgctgaagataatgtgcttgttaatgcatatgatgcaaagaaaccttaagggcgtggtaaatgtt |
30757281 |
T |
|
| Q |
101 |
cattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaattgactttttctatcaaaagcatggctatcctaatgtgaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30757280 |
cattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaattgactttttctatcaaaagcatggctatcctaatgtgaacaa |
30757181 |
T |
|
| Q |
201 |
gaagatttcacaggccaatgct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
30757180 |
gaagatttcacaggccaatgct |
30757159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30764832 - 30764611
Alignment:
| Q |
1 |
agtaaaaatacttctcttctttcactcccttctcttgctgaagataatgtgcttgttaatgcatatgatgcaaagaaaccttaagggcgtggtaaatgtt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30764832 |
agtaataatacttctcttctttcactcccttctcttgctgaagataatgtgcttgttaatgcatatgatgcaaagaaaccttaagggcgtggtaaatgtt |
30764733 |
T |
|
| Q |
101 |
cattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaattgactttttctatcaaaagcatggctatcctaatgtgaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30764732 |
cattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaattgactttttctatcaaaagcatggctatcctaatgtgaacaa |
30764633 |
T |
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| Q |
201 |
gaagatttcacaggccaatgct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
30764632 |
gaagatttcacaggccaatgct |
30764611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 43 - 205
Target Start/End: Original strand, 25227282 - 25227444
Alignment:
| Q |
43 |
gataatgtgcttgttaatgcatatgatgcaaagaaaccttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaata |
142 |
Q |
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|||||||| |||||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| | ||||| |||| |
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| T |
25227282 |
gataatgtacttgttaatgcatatgatgcgaagaaaccacaagggcatggtaaaggttcattcactaaaccttcatcaaggttttgtaccttttgcaata |
25227381 |
T |
|
| Q |
143 |
gacacaatcacacaattgactttttctatcaaaagcatggctatcctaatgtgaacaagaaga |
205 |
Q |
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| T |
25227382 |
ggcacaatcacaccattgatttttgttataaaaaacattgatatcttaatgtgaataagaaga |
25227444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 20700552 - 20700412
Alignment:
| Q |
82 |
taagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaattgactttttctatcaaaagcatg |
181 |
Q |
| |
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|||||||||| |||| | |||| || ||||||||| ||||||| ||||| ||||| || | | ||||||||| ||| ||||| ||||||||||||| |
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| T |
20700552 |
taagggcgtgataaaggatcatacattaaaccttcttcaaggtattgcaccttttgcaacaaatacaatcacaatgttgtttttttttatcaaaagcatg |
20700453 |
T |
|
| Q |
182 |
gctatcctaatgtgaacaagaagatttcacaggccaatgct |
222 |
Q |
| |
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|| |||||||||||||||| | |||||| ||||||||| |
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| T |
20700452 |
actttcctaatgtgaacaagcccaattcacaagccaatgct |
20700412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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