View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_low_37 (Length: 228)
Name: NF3439_low_37
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_low_37 |
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| [»] scaffold0076 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 20134251 - 20134132
Alignment:
| Q |
9 |
agaagcaaaggcaatattccgaactttgccaacatcgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatc |
108 |
Q |
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|||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20134251 |
agaagccaaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatc |
20134152 |
T |
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| Q |
109 |
gtgtcaggtggtacctttct |
128 |
Q |
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|||||||||||||||||||| |
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| T |
20134151 |
gtgtcaggtggtacctttct |
20134132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 20134080 - 20134001
Alignment:
| Q |
124 |
tttctgctattacaatactttttgtttatcgttttatgcgatataggcactgtgatagagtgataattaatattctggaga |
204 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
20134080 |
tttctgctattacaatactttttgttcgtcgttt-atgcgatatatgcactgtgatagagtgataattaatattctagaga |
20134001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 44357820 - 44357939
Alignment:
| Q |
9 |
agaagcaaaggcaatattccgaactttgccaacatcgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatc |
108 |
Q |
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| T |
44357820 |
agaagccaaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatc |
44357919 |
T |
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| Q |
109 |
gtgtcaggtggtacctttct |
128 |
Q |
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| T |
44357920 |
gtgtcaggtggtacctttct |
44357939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 44357991 - 44358070
Alignment:
| Q |
124 |
tttctgctattacaatactttttgtttatcgttttatgcgatataggcactgtgatagagtgataattaatattctggaga |
204 |
Q |
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| T |
44357991 |
tttctgctattacaatactttttgttcgtcgttt-atgcgatatatgcactgtgatagagtgataattaatattctagaga |
44358070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 47615 - 47734
Alignment:
| Q |
9 |
agaagcaaaggcaatattccgaactttgccaacatcgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatc |
108 |
Q |
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|||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47615 |
agaagctaaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcacagaagtcatgatatc |
47714 |
T |
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| Q |
109 |
gtgtcaggtggtacctttct |
128 |
Q |
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|||||||||||||||||||| |
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| T |
47715 |
gtgtcaggtggtacctttct |
47734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 47786 - 47871
Alignment:
| Q |
124 |
tttctgctattacaatactttttgtttatcgttttatgcgatataggcactgtgatagagtgataattaatattctggagacaatag |
210 |
Q |
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| T |
47786 |
tttctgctattacaatactttttgttcgtcgttt-atgcgatatatgcactgtgatagagtgataattaatattctggagacaatag |
47871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 12325444 - 12325553
Alignment:
| Q |
16 |
aaggcaatattccgaactttgccaacatcgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcag |
115 |
Q |
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| T |
12325444 |
aaggcaatattccgaacttcgccaaca---ccgccgaggaagataggcagcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcag |
12325540 |
T |
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| Q |
116 |
gtggtacctttct |
128 |
Q |
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||||||||||||| |
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| T |
12325541 |
gtggtacctttct |
12325553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 12325718 - 12325765
Alignment:
| Q |
163 |
gatataggcactgtgatagagtgataattaatattctggagacaatag |
210 |
Q |
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| T |
12325718 |
gatatatgcactgtgatagggtgataattaatattctggagacaatag |
12325765 |
T |
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