View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_low_6 (Length: 487)
Name: NF3439_low_6
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 38272457 - 38272938
Alignment:
| Q |
1 |
agacaggagtgataaaaggagaaaaatgaatgaatatattattgcaccgatggtttttgggacttggccattttatttagtagannnnnnnnn--caaca |
98 |
Q |
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| T |
38272457 |
agacaggagtgataaaaggagaaaaatgaatgaatatattattgcaccgatggtttttgggacttggccattttatttagtagatttttttttttcaaca |
38272556 |
T |
|
| Q |
99 |
tgaaaagtttgatctaggtgggacccattgttaattatttaactcaaattcttatatgatttgtgtttgtgtgtgaatgtttgttatcacggtgaatttg |
198 |
Q |
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| T |
38272557 |
tgaaaagtttgatctaggtgggacccattgttaattatttaactcaaattcttatatgatttgtgtttgtgtgtgaatgtttgttatcacggtgaatttg |
38272656 |
T |
|
| Q |
199 |
tctgaattgttgtagctttttataagatcgcgatgatggttggtggtggtttattgtaattctaacaaatatatcaattgtgatatcaaatatgaattgt |
298 |
Q |
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| T |
38272657 |
tctgaattgttgtagctttttataagatcacgatgatggtaggtggtggttcattgtaattctaacaaatctatcaattgtgataccaaatatgaattgt |
38272756 |
T |
|
| Q |
299 |
tgacaatgtgatgtttgcgagtaacatgtaatcagctttggaagtgatctgtcaaggtttttattagctctttatattcaatcttatctaaggagctaaa |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38272757 |
tgacaatgtgatgtttgcgagtaacatgtaatcagctttggaaatgatctgtcaaggtttttgttagctctttatattcaatcttatctaaggagctaaa |
38272856 |
T |
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| Q |
399 |
attacggtactttattgtaattatagcaaattcattgtgatatcaaacatacaccgaatctttgttgacaatatgatgatgt |
480 |
Q |
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| T |
38272857 |
attgcggtagtttattgtaattatagcaaattcattgtgatatcaaacatacaccgaatctttgttgacaatatgatgatgt |
38272938 |
T |
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