View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3439_low_7 (Length: 464)

Name: NF3439_low_7
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3439_low_7
NF3439_low_7
[»] chr6 (5 HSPs)
chr6 (241-364)||(25522644-25522767)
chr6 (265-369)||(24141181-24141285)
chr6 (379-435)||(32007677-32007733)
chr6 (182-226)||(25522565-25522609)
chr6 (41-106)||(32003352-32003416)
[»] chr5 (8 HSPs)
chr5 (241-369)||(42123850-42123978)
chr5 (173-226)||(42124016-42124069)
chr5 (286-368)||(42129236-42129318)
chr5 (286-359)||(34240203-34240276)
chr5 (286-359)||(41713215-41713288)
chr5 (241-359)||(34232415-34232533)
chr5 (395-457)||(42116324-42116386)
chr5 (181-223)||(42129394-42129436)
[»] chr4 (1 HSPs)
chr4 (241-369)||(11118495-11118623)
[»] chr2 (1 HSPs)
chr2 (241-369)||(32681569-32681693)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 25522644 - 25522767
Alignment:
Q  241 ttgatcttagttataatttactggatggtgaaatccctttggttgtttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactgg 340  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||    
T  25522644 ttgatcttagtgataatttactggatgatgaaatacctttggttgtttgcaatatcagttcacttgaatttctcaacttgggatacaacaatttgactgg 25522743  T
Q  341 tatcattccacaatgtcttactga 364  Q
    ||||||||||||||||||| ||||    
T  25522744 tatcattccacaatgtcttgctga 25522767  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 265 - 369
Target Start/End: Complemental strand, 24141285 - 24141181
Alignment:
Q  265 atggtgaaatccctttggttgtttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactggtatcattccacaatgtcttactga 364  Q
    |||||||||||| ||||| | |||||||||| ||||||||| ||||||| ||||||  ||||||| ||||||| ||||||||||||||||||||| ||||    
T  24141285 atggtgaaatccatttggctatttgcaatatcagttcacttgaatttcttaacttggaatacaacaatttgaccggtatcattccacaatgtctttctga 24141186  T
Q  365 ttcac 369  Q
    |||||    
T  24141185 ttcac 24141181  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 379 - 435
Target Start/End: Complemental strand, 32007733 - 32007677
Alignment:
Q  379 tgaatctttatggtttttgtttcacatgtattgactgtttcataatgaaaaaacaat 435  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  32007733 tgaatctttatggcttttgtttcacatgtattgactgtttcataatgaaacaacaat 32007677  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 25522565 - 25522609
Alignment:
Q  182 tttttgaacctctctcaaaacttgttcatgtcaatagatcaatgg 226  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||    
T  25522565 tttttgaacctctctcaaaactatttcatgtcaatagaccaatgg 25522609  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 32003416 - 32003352
Alignment:
Q  41 ttttgaaaaggatcatttagtttattttgtaaataaaactttacgactgatatttagaaaaggttt 106  Q
    |||||||||||| | |||| |||||||||| ||||||| ||||||||| || |||| |||||||||    
T  32003416 ttttgaaaaggaacctttaatttattttgttaataaaagtttacgacttatgttta-aaaaggttt 32003352  T

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Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 241 - 369
Target Start/End: Complemental strand, 42123978 - 42123850
Alignment:
Q  241 ttgatcttagttataatttactggatggtgaaatccctttggttgtttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactgg 340  Q
    ||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  42123978 ttgatcttagtcataatttactgaatggtgaaatccctttggcagtttgcaatatgagttcacttcaatttctcaacttgggttacaacgatttgactgg 42123879  T
Q  341 tatcattccacaatgtcttactgattcac 369  Q
    |||||||||||||||| || |||| ||||    
T  42123878 tatcattccacaatgttttgctgaatcac 42123850  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 42124069 - 42124016
Alignment:
Q  173 tcatggctatttttgaacctctctcaaaacttgttcatgtcaatagatcaatgg 226  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42124069 tcattgctatttttgaacctctctcaaaacttgttcacgtcaatagatcaatgg 42124016  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 286 - 368
Target Start/End: Complemental strand, 42129318 - 42129236
Alignment:
Q  286 tttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactggtatcattccacaatgtcttactgattca 368  Q
    |||||||| |||||||||||||||| |||||||||  | ||||  ||||||| | ||||||||||||||||||| || |||||    
T  42129318 tttgcaatttgagttcacttcaattactcaacttggcacacaatcatttgacagatatcattccacaatgtcttgctaattca 42129236  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 34240203 - 34240276
Alignment:
Q  286 tttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactggtatcattccacaatgtctt 359  Q
    |||||||| ||||||| ||| |||||||||||||| || ||||| |||| || |||| ||||||||||||||||    
T  34240203 tttgcaatttgagttcccttgaatttctcaacttgggacacaacaatttcacaggtaacattccacaatgtctt 34240276  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 41713215 - 41713288
Alignment:
Q  286 tttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactggtatcattccacaatgtctt 359  Q
    |||||||||||||||||||   |||||||||||||  | ||||| | |||||||||| ||||||||||||||||    
T  41713215 tttgcaatatgagttcactgggatttctcaacttggcaaacaacaaattgactggtaccattccacaatgtctt 41713288  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 359
Target Start/End: Original strand, 34232415 - 34232533
Alignment:
Q  241 ttgatcttagttataatttactggatggtgaaatccctttggttgtttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactgg 340  Q
    |||||||||||| ||| |||||||| ||||| ||| |||||    |||||| |||||  ||||||| |||||||||||||    ||||| | ||||| ||    
T  34232415 ttgatcttagttctaacttactggaaggtgatatctctttgtcgatttgcagtatgaaatcacttcgatttctcaacttggcgcacaacaaattgaccgg 34232514  T
Q  341 tatcattccacaatgtctt 359  Q
    |||||||||||||| ||||    
T  34232515 tatcattccacaatatctt 34232533  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 457
Target Start/End: Complemental strand, 42116386 - 42116324
Alignment:
Q  395 ttgtttcacatgtattgactgtttcataatgaaaaaacaatattccatgtattatgatgatgt 457  Q
    ||||| ||| || ||||||||||||||||||  | ||||||||||||||||||||||| ||||    
T  42116386 ttgttacacgtgcattgactgtttcataatgttacaacaatattccatgtattatgatcatgt 42116324  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 42129436 - 42129394
Alignment:
Q  181 atttttgaacctctctcaaaacttgttcatgtcaatagatcaa 223  Q
    |||||||||||||||||||||| ||||||  ||||||||||||    
T  42129436 atttttgaacctctctcaaaacatgttcacatcaatagatcaa 42129394  T

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Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 241 - 369
Target Start/End: Complemental strand, 11118623 - 11118495
Alignment:
Q  241 ttgatcttagttataatttactggatggtgaaatccctttggttgtttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactgg 340  Q
    |||||||||||| |||||||||| ||||||||||||||||||  |||||| |||| ||||||||| ||||| | |||||| || ||||| ||||||||||    
T  11118623 ttgatcttagttttaatttactgaatggtgaaatccctttggcagtttgcgatatcagttcacttgaatttttgaacttgggaaacaacaatttgactgg 11118524  T
Q  341 tatcattccacaatgtcttactgattcac 369  Q
    | ||||||||||||||||| |||| ||||    
T  11118523 tgtcattccacaatgtcttgctgaatcac 11118495  T

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Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 241 - 369
Target Start/End: Original strand, 32681569 - 32681693
Alignment:
Q  241 ttgatcttagttataatttactggatggtgaaatccctttggttgtttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactgg 340  Q
    |||||||||||| ||||   ||||||||||||| ||||||||  ||||||||||||   |||||| |||||||||||||  |||||||||||||||||||    
T  32681569 ttgatcttagttttaatcagctggatggtgaaa-ccctttggcagtttgcaatatg---tcacttgaatttctcaactttagatacaactatttgactgg 32681664  T
Q  341 tatcattccacaatgtcttactgattcac 369  Q
    ||||||||||||| |||||| | ||||||    
T  32681665 tatcattccacaacgtcttattaattcac 32681693  T

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