View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3439_low_8 (Length: 461)
Name: NF3439_low_8
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3439_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 12 - 444
Target Start/End: Complemental strand, 40079676 - 40079244
Alignment:
| Q |
12 |
atgagatgaattcaaataacaacagagagaatttgatattttgggttcaactgaaagtggagaaagtgttataatgcgatacaaacttcctttcttgcga |
111 |
Q |
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| T |
40079676 |
atgacatgaattcaaataacaacagagagaatttgatattttgggttcaactgaaagtggagaaagtgttctaatgcgatacaaacttcctttcttgcga |
40079577 |
T |
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| Q |
112 |
gacatagtggagattcgtagaaagagtcattgtacaataaagaaggattcgtcatatctagaggattagtcgacaatccaacccatgtcaatgtcggtga |
211 |
Q |
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| T |
40079576 |
gacatagtggagattcgtagaaagagtcattgtacaataaagaaggattcgtcatatctagaggattagtcgacaatccaacccatgtcaatgtcggtga |
40079477 |
T |
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| Q |
212 |
catgggtacgaaatatggtggagccgagcttgcattatacctatctccaaccaagaggatgtaaaagatttgtgggaagacatcaaggaacaattctcaa |
311 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40079476 |
catgggtatgaaatatggtggagccgagcttgcattatacctatctccaaccaagaggatgtaaaagatttgtgggaggacatcaaggaacaattctcaa |
40079377 |
T |
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| Q |
312 |
tcataaacggaccaaggattaaacaaatcaaggcagagttggaggaatgtcgacaaacaaagatggccatggtggcatattgatattgtggttagttgaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40079376 |
tcataaacggaccaaggattaaacaaatcaaggcagagttggaggaatgtcgacaaacaaagatggccatggtggcatattgatattgtggttaattgaa |
40079277 |
T |
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| Q |
412 |
aacatgaacaggaaaattatcaacaacgagaag |
444 |
Q |
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| T |
40079276 |
aacatgaactggaaaattatcaacaacgagaag |
40079244 |
T |
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