View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3439_low_9 (Length: 436)

Name: NF3439_low_9
Description: NF3439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3439_low_9
NF3439_low_9
[»] chr3 (6 HSPs)
chr3 (20-345)||(53424378-53424703)
chr3 (32-275)||(53431594-53431843)
chr3 (336-428)||(53424066-53424158)
chr3 (31-289)||(48373873-48374134)
chr3 (38-89)||(26096526-26096577)
chr3 (240-285)||(53308910-53308955)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 53424703 - 53424378
Alignment:
Q  20 aaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatggttacacaatctatgaca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53424703 aaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatggttacacaatctatgaca 53424604  T
Q  120 agattaaaatggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatgatttcccagcaaccgtggt 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53424603 agattaaaatggcgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatgacttcccagcaaccgtggt 53424504  T
Q  220 aagaacaaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaatttacggtatatcaagaagattaa 319  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53424503 aagaacaagagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaatttacggtatatcaagaagattaa 53424404  T
Q  320 tggatatacaccatcaatataaagtt 345  Q
    ||||||||||||||||||||||||||    
T  53424403 tggatatacaccatcaatataaagtt 53424378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 53431843 - 53431594
Alignment:
Q  32 tgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcata---gatgatggttacacaatctatgacaagattaaaa 128  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||||| |||   ||||||| |||| ||| | || |||| |||||||    
T  53431843 tgtcacccaaattcattaaataagaaaaaagtcaaaggaaagattgtcatttgtgatggaataagtgatgatgattactcaaccaataacaaaattaaaa 53431744  T
Q  129 tggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattat---gatttcccagcaaccgtggtaagaac 225  Q
     |||||||| ||||||||||||||||||||||||||||| |||||| || ||||    |  | | | ||||   || ||||||||||| ||||||||| |    
T  53431743 cggtgcaagggatgggtggattaggtcttgttcatattactgaccaggatggagctatgatacgtagttatggagacttcccagcaacagtggtaagatc 53431644  T
Q  226 aaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcat 275  Q
    |||||||| ||||||| |||||||||| | ||||||||||||||||||||    
T  53431643 aaaagatgttgccacactcctccaatacgccaattcaacaaggtatgcat 53431594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 336 - 428
Target Start/End: Complemental strand, 53424158 - 53424066
Alignment:
Q  336 atataaagttattttacactcacattcaatcagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc 428  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53424158 atataaagttattttacactcacattcaattagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc 53424066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 31 - 289
Target Start/End: Original strand, 48373873 - 48374134
Alignment:
Q  31 gtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatggttacacaatctatgacaagattaaaatg 130  Q
    |||||| |||| ||||||||||| ||| |||||  ||||||| |||||||| || |||||  |||||| || |||  ||| | |||| || ||||  | |    
T  48373873 gtgtcatccaagttcattagataagaaaaaagttgaaggaaatattgtcatctgcgatggggtagatggtgattattcaaccgatgaaaaaattaggacg 48373972  T
Q  131 gtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatg---atttcccagcaaccgtggtaagaacaa 227  Q
    |||||||||  |||||||||||||||||||||||||| |||||| || ||||  | |||||  | |||||   | ||||||||||| ||||||||| |||    
T  48373973 gtgcaagaggcgggtggattaggtcttgttcatattactgaccaggatggagctgtggcaaatatttatgcagacttcccagcaacagtggtaagatcaa 48374072  T
Q  228 aagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagtttttta 289  Q
    |||||| || |||| ||||| |||||||||||||||| ||||| ||||||||||| ||||||    
T  48374073 aagatgttgtcacactcctcaaatatgtcaattcaacgaggtaagcattttaaaggttttta 48374134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 26096577 - 26096526
Alignment:
Q  38 ccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatg 89  Q
    |||| ||||||||| | ||| |||||||||||||||||||||||||||||||    
T  26096577 ccaagttcattagacaagaaaaaagtcaaaggaaagattgtcatatgtgatg 26096526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 53308955 - 53308910
Alignment:
Q  240 caatcctccaatatgtcaattcaacaaggtatgcattttaaagttt 285  Q
    |||| |||||||||||||||||||||||||| ||||| ||||||||    
T  53308955 caatactccaatatgtcaattcaacaaggtaagcattataaagttt 53308910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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