View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3440_high_11 (Length: 253)
Name: NF3440_high_11
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3440_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3629499 - 3629263
Alignment:
| Q |
1 |
tattgcagacctttgggaatttttgttgttaattaaggttcttatttattggtagnnnnnnnnnnnnngaaagtatttattggtacacttgtttagttcc |
100 |
Q |
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| T |
3629499 |
tattgcagacctttgggaattttt-ttgttaattaaggttcttatttattggtagtttttttatttttgaaagtatttattggtacacttgtttagttcc |
3629401 |
T |
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| Q |
101 |
tatgaacccaacaaaaatggataatggaaccaagatctagaagcaaccgtaaattgggtcccaatgaataaccggtactcgttgttagatccttataaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3629400 |
tatgaacccaacaaaaatggataatggaaccaagatctagaagcaaccgtaaattgggtcccaatgaataaccggtactcgttgttagatccttataaat |
3629301 |
T |
|
| Q |
201 |
caagaaatgaagattaggtcttctcaagtgatgaaact |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3629300 |
caagaaatgaagattaggtcttctcaagtgatgaaact |
3629263 |
T |
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