View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3440_high_16 (Length: 245)

Name: NF3440_high_16
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3440_high_16
NF3440_high_16
[»] chr1 (9 HSPs)
chr1 (18-245)||(12948769-12948996)
chr1 (18-245)||(12916569-12916796)
chr1 (18-245)||(12954349-12954576)
chr1 (21-245)||(12940591-12940815)
chr1 (31-245)||(12988395-12988609)
chr1 (27-245)||(12994683-12994901)
chr1 (18-80)||(12887464-12887526)
chr1 (18-80)||(12923728-12923790)
chr1 (18-80)||(12894545-12894607)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 12948996 - 12948769
Alignment:
Q  18 ttcagcacattcatcaactgatttgatattggaatagcttatttctaaagtattggcaccaaatatcttaaccttaaaatatgatccaccaatgaatttg 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12948996 ttcagcaccttcatcaactgatttgatattggaatagcttatttctaaagtattggcaccaaatatcttaaccttaaaatatgatccaccaatgaatttg 12948897  T
Q  118 aaagttaagagatatccatatttgaaaggctttgcaaaactttcccagnnnnnnngaaaccaaatatcaccattactcttcacccaaaatattttttgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  12948896 aaagttaagagatatccatatttgaaaggctttgcaaaactttcccagtttttttgaaaccaaatatcaccattactcttcacccaaaatattttttgtt 12948797  T
Q  218 caacaccgtttggaaatttaaggaatat 245  Q
    ||||||||||||||||| ||||||||||    
T  12948796 caacaccgtttggaaatataaggaatat 12948769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 12916569 - 12916796
Alignment:
Q  18 ttcagcacattcatcaactgatttgatattggaatagcttatttctaaagtattggcaccaaatatcttaaccttaaaatatgatccaccaatgaatttg 117  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12916569 ttcagcaccttcatcaactgatttgatattggagtagtttatttctaaagtattggcaccaaatatcttaaccttaaaatatgatccaccaatgaatttg 12916668  T
Q  118 aaagttaagagatatccatatttgaaaggctttgcaaaactttcccagnnnnnnngaaaccaaatatcaccattactcttcacccaaaatattttttgtt 217  Q
    || ||||| |||||||||||||| | |  ||| ||||||||||||||        ||||||||||||||||||| |||| |||||||||||||| |||||    
T  12916669 aatgttaacagatatccatatttcagaaacttagcaaaactttcccaattcttttgaaaccaaatatcaccatttctctccacccaaaatatttcttgtt 12916768  T
Q  218 caacaccgtttggaaatttaaggaatat 245  Q
     |||||| ||||||||||||| ||||||    
T  12916769 gaacaccatttggaaatttaatgaatat 12916796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 12954576 - 12954349
Alignment:
Q  18 ttcagcacattcatcaactgatttgatattggaatagcttatttctaaagtattggcaccaaatatcttaaccttaaaatatgatccaccaatgaatttg 117  Q
    |||||||| ||||||||| ||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12954576 ttcagcaccttcatcaacggatttgatatttgcataatttatttctaaagtattggcaccaaatatcttaaccttaaaatatgatccaccaatgaatttg 12954477  T
Q  118 aaagttaagagatatccatatttgaaaggctttgcaaaactttcccagnnnnnnngaaaccaaatatcaccattactcttcacccaaaatattttttgtt 217  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||        |||||||||| ||||||||||||| | |||||||||||| |||||    
T  12954476 aaagttaagagatatccatatttcagaaactttgcaaaactttcccaatttttttgaaaccaaatgtcaccattactctccgcccaaaatatttcttgtt 12954377  T
Q  218 caacaccgtttggaaatttaaggaatat 245  Q
     |||||| ||||||||||||||||||||    
T  12954376 gaacaccatttggaaatttaaggaatat 12954349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 245
Target Start/End: Complemental strand, 12940815 - 12940591
Alignment:
Q  21 agcacattcatcaactgatttgatattggaatagcttatttctaaagtattggcaccaaatatcttaaccttaaaatatgatccaccaatgaatttgaaa 120  Q
    ||||| |||||||||  |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12940815 agcaccttcatcaacatatttgatatttgcatagtttatttctaaagtattggcaccaaatatcttaaccttaaagtatgatccaccaatgaatttgaaa 12940716  T
Q  121 gttaagagatatccatatttgaaaggctttgcaaaactttcccagnnnnnnngaaaccaaatatcaccattactcttcacccaaaatattttttgttcaa 220  Q
    |||||||||||||||||||| | || ||| ||||||||||||||        ||||||||||||||||||| |||| |||||||||||||| ||||| ||    
T  12940715 gttaagagatatccatatttcagagacttagcaaaactttcccaattcttttgaaaccaaatatcaccatttctctccacccaaaatatttcttgttgaa 12940616  T
Q  221 caccgtttggaaatttaaggaatat 245  Q
     ||| ||||||||||||||||||||    
T  12940615 taccatttggaaatttaaggaatat 12940591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 31 - 245
Target Start/End: Complemental strand, 12988609 - 12988395
Alignment:
Q  31 tcaactgatttgatattggaatagcttatttctaaagtattggcaccaaatatcttaaccttaaaatatgatccaccaatgaatttgaaagttaagagat 130  Q
    ||||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||    
T  12988609 tcaacagattttatattggaatagtttatttccaaagtattggcaccaaatatcttaaccttgaaatatgatccacctatgtatttaaaagttaagagat 12988510  T
Q  131 atccatatttgaaaggctttgcaaaactttcccagnnnnnnngaaaccaaatatcaccattactcttcacccaaaatattttttgttcaacaccgtttgg 230  Q
    |||||||||| | |  |||||||||| |||||||        |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  12988509 atccatatttcagaaactttgcaaaattttcccaatttttttgaaaccaaatatcaccattactctccacccaaaatattttttgttgaacaccgtttgg 12988410  T
Q  231 aaatttaaggaatat 245  Q
    ||||| |||||||||    
T  12988409 aaattgaaggaatat 12988395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 245
Target Start/End: Complemental strand, 12994901 - 12994683
Alignment:
Q  27 ttcatcaactgatttgatattggaatagcttatttctaaagtattggcaccaaatatcttaaccttaaaatatgatccaccaatgaatttgaaagttaag 126  Q
    ||||||||| ||||| |||||||||||   ||||||||||| |||| ||||||||||||||||||| |||||||||||||||||  |||| ||||||||     
T  12994901 ttcatcaacagattttatattggaataatctatttctaaagcattgacaccaaatatcttaaccttgaaatatgatccaccaatatatttaaaagttaaa 12994802  T
Q  127 agatatccatatttgaaaggctttgcaaaactttcccagnnnnnnngaaaccaaatatcaccattactcttcacccaaaatattttttgttcaacaccgt 226  Q
    |||| ||||||||||| || |||||||||| | |||||        |||||||||||||||||||| ||| |||||||||||||||||||| |||||| |    
T  12994801 agatttccatatttgagagactttgcaaaattatcccaatttttttgaaaccaaatatcaccattattctccacccaaaatattttttgttgaacaccat 12994702  T
Q  227 ttggaaatttaaggaatat 245  Q
    |||| ||||||||||||||    
T  12994701 ttggtaatttaaggaatat 12994683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 12887464 - 12887526
Alignment:
Q  18 ttcagcacattcatcaactgatttgatattggaatagcttatttctaaagtattggcaccaaa 80  Q
    |||||||| ||||||||||||||| |||||||||||  |||||| |||||||||| |||||||    
T  12887464 ttcagcaccttcatcaactgattttatattggaataatttatttataaagtattgacaccaaa 12887526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 12923728 - 12923790
Alignment:
Q  18 ttcagcacattcatcaactgatttgatattggaatagcttatttctaaagtattggcaccaaa 80  Q
    |||||||| ||||||||||||||| |||||||||||  |||||| |||||||||| |||||||    
T  12923728 ttcagcaccttcatcaactgattttatattggaataatttatttataaagtattgacaccaaa 12923790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 12894545 - 12894607
Alignment:
Q  18 ttcagcacattcatcaactgatttgatattggaatagcttatttctaaagtattggcaccaaa 80  Q
    |||||||| | ||||||||||||| |||||||||||  |||||| |||||||||| |||||||    
T  12894545 ttcagcacctacatcaactgattttatattggaataatttatttataaagtattgacaccaaa 12894607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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