View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3440_high_17 (Length: 244)
Name: NF3440_high_17
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3440_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 404542 - 404317
Alignment:
| Q |
1 |
atttttaagcttgagctttcaaattgttgaaaatcaaaaggaacagattcgccgaagtataaatgagatgcttgaagatctctaagagctggacatccag |
100 |
Q |
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| T |
404542 |
atttttaagcttgagctttcaaattgttgaaaatcaaaaggaacagattcgccgaagtataaatgagatgcttgaagatctctaagagctggacatccag |
404443 |
T |
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| Q |
101 |
ctagaagtgttttaagtgagggcaatgtaaaaggaaaatgtgtgtccacagataagtgacaaagcttgagattaacaagggttgtacaacgcagaatgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
404442 |
ctagaagtgttttaagtgagggcaatgtaaaaggaaaatttgtgtccacagataagtgacaaagcttgagattaacaagggttgtacaacgcagaatgtt |
404343 |
T |
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| Q |
201 |
ggtaggaaagtgagctcgtctaggct |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
404342 |
ggtaggaaagtgagctcgtctaggct |
404317 |
T |
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