View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3440_high_3 (Length: 501)
Name: NF3440_high_3
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3440_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 2530445 - 2529972
Alignment:
| Q |
18 |
aaacaattcttccttacatagaagtactagaattcgaaccttgactacaacaattctcggtcatactttacttatctccgaactctaagaccgnnnnnnn |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2530445 |
aaacaattcttcctcacatagaagtactagaattcgaaccttgactacaacaattctcggtcatactttacttatctccgaactctaagaccgaaaaaaa |
2530346 |
T |
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| Q |
118 |
tcctcagataagaattggctgttggagtagaactacaaaaccatgagaaatcattggcctcttttccatattgtgaataccatatggttatgtttgtgta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2530345 |
tcctcagataagaattggctgttggagtagaactacaaaaccatgagaaatcattggcctcttttccatattgtgaataccctatggttatgtttgtgta |
2530246 |
T |
|
| Q |
218 |
tcatgcttctgtctgaggtagttttggtttcggctggtattcaacggattggaaagatctcacctggatttgaaggctctcaaatgaattggattgatag |
317 |
Q |
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|||| ||| |||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2530245 |
tcatacttttgtcagaagtagttttggtttcggctagtattcaacggattggaaagatctcacctggatttgaaggctctcaaatgaattggattgatag |
2530146 |
T |
|
| Q |
318 |
gaatggaaaatttcttgtgtcaaacaaacaagaatttggttttggctttatcacaacttcaaatgacaacacattgtttctacttgcaatagtccacatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2530145 |
gaatggaaaatttcttgtgtcaaacaaacaagaatttggttttggctttatcacaacttcaaatgacaacacattgtttctacttgcaatagtccacatg |
2530046 |
T |
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| Q |
418 |
gatagcacaaaagttgtttggactgcaaatagagaatctcctgtttctaattctgataagtttgtgtttgatga |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2530045 |
gatagcacaaaagttgtttggactgcaaatagagaatctcctgtttctaattctgataagtttgtgtttgatga |
2529972 |
T |
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