View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3440_high_6 (Length: 384)
Name: NF3440_high_6
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3440_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 14 - 379
Target Start/End: Original strand, 12560740 - 12561105
Alignment:
| Q |
14 |
gaatgtatgcagattttgaagtctattgcagaagatcaaagatttaatacattccacctttgaagttttcacttggacttgtttaagacatgataaacaa |
113 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12560740 |
gaatgtatacagattttgaagtctattgcagaagatcaaagatttaatacattccacctttaaagttttcacttggacttgtttaagacatgataaacaa |
12560839 |
T |
|
| Q |
114 |
agtcttaatcttatcaactcagatgctaccaattctaagtttaaagtttaatgcaaagagtgacaagtggcgacttagccgcaaattttcctcgtcttac |
213 |
Q |
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| T |
12560840 |
agtcttaatcttatcaactaagatgctaccaattctaagtttaaagtttaatgcaaagagtgacaagtggtgacttagccgcaaattttcctcgtcttac |
12560939 |
T |
|
| Q |
214 |
atgtaattcataaacgcaagtcatatgtgccatgcacatatcaagaaacttagctcgctcctcagaatgaacaacaatgacatcgtcaccagccattggc |
313 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12560940 |
atgtaattcataaacgcaagtcatgtgtgccatgcacatatcaagaaacttagctcgctcctcagaatgaacaacaatgacatcgtcaccagccattggc |
12561039 |
T |
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| Q |
314 |
agccctcgaatcccttcaatctcaacaggcattgctggagttgctcgttgagttaacctctctgct |
379 |
Q |
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| T |
12561040 |
agccctcgaatcccttcaatctcaacaggcattgcgggagttgctcgttgagttaacctccctgct |
12561105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 12558445 - 12558640
Alignment:
| Q |
16 |
atgtatgcagattttgaagtctattgcagaagatcaaagatttaatacattccacctttgaagttttcacttggacttgtttaagacatgataaacaaag |
115 |
Q |
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| T |
12558445 |
atgtatgcagatgttgatgtctactgcagaagatcaaagatccaatgcattccacctttgaagttttcacttaaagttgttcaagatatgataaacaaag |
12558544 |
T |
|
| Q |
116 |
tcttaatcttatcaactcagatgctaccaattctaagtttaaagtttaatgcaaagagtgacaagtggcgacttagccgcaaattttcctcgtctt |
211 |
Q |
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| T |
12558545 |
tcttaaccctattaactcaaatgctaccgattctaagattaaagtttaaggaaaagagttacgagtggtgaactatcagcaaattttcctagtctt |
12558640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 13802933 - 13803048
Alignment:
| Q |
264 |
tagctcgctcctcagaatgaacaacaatgacatcgtcaccagccattggcagccctcgaatcccttcaatctcaacaggcattgctggagttgctcgttg |
363 |
Q |
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|||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| |
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| T |
13802933 |
tagcccgctcctcagaatgaacagcaatgacatcgtcaccggccattggcagccctcgaagcccttcaatctccacaggcattgccggagttgctcgttg |
13803032 |
T |
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| Q |
364 |
agttaacctctctgct |
379 |
Q |
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| T |
13803033 |
agttaacctccctgct |
13803048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 9291213 - 9291062
Alignment:
| Q |
14 |
gaatgtatgcagattttgaagtctattgcagaagatcaaagatttaatacattccacctttgaagttttcacttggacttgtttaa-gacatgataaaca |
112 |
Q |
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|||||| |||| | ||||| ||||| | ||||||||||||||| ||| ||||||||||||||||||||||||| | |||||| || || |||||||||| |
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| T |
9291213 |
gaatgtgtgcataatttgatgtctactacagaagatcaaagatccaatgcattccacctttgaagttttcacttaggcttgttcaaagatatgataaaca |
9291114 |
T |
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| Q |
113 |
aagtcttaatcttatcaactcagatgctaccaattctaagtttaaagtttaa |
164 |
Q |
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|||||| || | | |||||||||||||||||||||||||||| ||| ||||| |
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| T |
9291113 |
aagtctgaaccctgtcaactcagatgctaccaattctaagttcaaaatttaa |
9291062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 13801105 - 13801167
Alignment:
| Q |
207 |
gtcttacatgtaattcataaacgcaagtca---tatgtgccatgcacatatcaagaaacttag |
266 |
Q |
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|||| ||||||||||||| |||||| |||| ||||||| ||||||||||||| |||||||| |
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| T |
13801105 |
gtctaacatgtaattcatgaacgcatgtcagtatatgtgcaatgcacatatcaaaaaacttag |
13801167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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