View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3440_low_10 (Length: 353)
Name: NF3440_low_10
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3440_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 150 - 343
Target Start/End: Original strand, 404788 - 404981
Alignment:
| Q |
150 |
atcacaaatagaatgtttgtaatatttgcacggatatgagtttttaatacatgtcctatttgataacttttcattctttttcaattagcaccaatatgag |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
404788 |
atcacaaatagaatgtttgtaatatttgcacggatatgagtttttaatacatgtcctatttgataacttttcattctttttcaattagcaccaatatgag |
404887 |
T |
|
| Q |
250 |
catgttgtgctattgtcactgagctaacaattgcttcatatcattcctgtgaatttactgtcgttggtataaaaatttggaatttgtgatgatg |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
404888 |
catgttgtgctattgtcactgagctaacaattgcttcatatcattcctgtgaatttactgtcgttggtataaaaatttggaatttgtgatgatg |
404981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 150 - 342
Target Start/End: Complemental strand, 973049 - 972853
Alignment:
| Q |
150 |
atcacaaatagaatgtttgtaatatttgcacggatatgagtttttaatacatgtcctatttgataacttttcattctttttcaattagc----accaata |
245 |
Q |
| |
|
|||||||| |||| |||||||||||| |||| ||||||||||| || ||||||| ||||||| ||||||||||| | ||| |||||| ||||||| |
|
|
| T |
973049 |
atcacaaacagaaagtttgtaatattagcacctatatgagttttgaaaacatgtcttatttgagaacttttcattatcttttaattagttaggaccaata |
972950 |
T |
|
| Q |
246 |
tgagcatgttgtgctattgtcactgagctaacaattgcttcatatcattcctgtgaatttactgtcgttggtataaaaatttggaatttgtgatgat |
342 |
Q |
| |
|
|||||||||||| | || |||||||| |||||||| |||||||||||| |||||||||||||| ||||| ||| ||| |||||||||| |||||| |
|
|
| T |
972949 |
cgagcatgttgtgttgttatcactgaggtaacaatttcttcatatcatttttgtgaatttactgttgttggaatagaaacttggaatttgcgatgat |
972853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 339
Target Start/End: Original strand, 410973 - 411138
Alignment:
| Q |
169 |
taatatttgcacggatatgagtttttaatacatgtcctatttgataacttttcattctttttcaattagcaccaatatgagcatgttgtgc--tattgtc |
266 |
Q |
| |
|
||||||| |||| ||||||||||| ||| |||||| ||||||| ||||||| ||| | ||||||| ||||||||||||||||| | ||||| |
|
|
| T |
410973 |
taatattagcaccaatatgagttttgaatgcatgtcttatttgagaactttt-------tttaatttagcacaaatatgagcatgttgtgtgttgttgtc |
411065 |
T |
|
| Q |
267 |
actgagctaacaattgcttcatatcattcctgtgaatttactgtcgttggtataaaaatttggaatttgtgat |
339 |
Q |
| |
|
| |||| ||||||||| |||||||| || |||||| |||||||| ||||| | | |||||||||||||||||| |
|
|
| T |
411066 |
attgaggtaacaattgattcatatcgtttctgtgagtttactgttgttggaacagaaatttggaatttgtgat |
411138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 404674 - 404702
Alignment:
| Q |
19 |
tgaaaaagagcaatgtgattatcatttgt |
47 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
404674 |
tgaaaaagagcaatgtgattatcatttgt |
404702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University