View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3440_low_12 (Length: 270)
Name: NF3440_low_12
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3440_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 47179929 - 47179682
Alignment:
| Q |
8 |
ccacaaaacattaataaagagaatttcaattttagaataatgttacttgaaaaaactttgaagagagaaagaaataaaatagaattgcggacatgactac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47179929 |
ccacaaaacattaataaagagaatttcaattttagaataatgttacttgaaaaaactttgaagtgagaaagaaataaaatagaattgcggacatgactac |
47179830 |
T |
|
| Q |
108 |
tttgatgagaataaagcagcaatccatagatgaattcatatgtttccacacgttgaaagtcttctttgaattttctgaaccactgagttaa-aaaatgat |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
47179829 |
tttgatgagaataaagcagctatccatagatgaattcatatttttccacacgttgaaagtcttctttgaattttctgaaccactgagttaaaaaaataat |
47179730 |
T |
|
| Q |
207 |
aataatatcctcgcagattatccttaatcgacaggccaaggcacttaa |
254 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47179729 |
aataatatcctcacagattatccttaatcgacaggccaaggcacttaa |
47179682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University