View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3440_low_14 (Length: 253)
Name: NF3440_low_14
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3440_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 4411524 - 4411637
Alignment:
| Q |
123 |
gcttaatgtgataaaatgtaaaatttcaagatttgaacacaattaatggacaattttttccaattttgagtatatgttagaatttcaatctctttgtata |
222 |
Q |
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| T |
4411524 |
gcttaatgtgataaaatgtataatttcaagatttgaacacaattaatggacaattttttccaattttgagtatatgttagaatttcaatctctttgtata |
4411623 |
T |
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| Q |
223 |
aataagtacacaca |
236 |
Q |
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|||||||||||||| |
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| T |
4411624 |
aataagtacacaca |
4411637 |
T |
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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4411402 - 4411485
Alignment:
| Q |
1 |
attattaattataaatcaataaatatattttttatagattaagtttattctttaactagtaaaaaatagtcaatatctttaaac |
84 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4411402 |
attattaattataaatcaataaatatattttttatagagtaagtttattctttaactagtaaaaaatagtcaatatctttaaac |
4411485 |
T |
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