View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3440_low_2 (Length: 527)
Name: NF3440_low_2
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3440_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 2 - 519
Target Start/End: Complemental strand, 18319972 - 18319455
Alignment:
| Q |
2 |
gaggagaagacgacaggtatacatagaatcaaacaaattgcgacgcgcgtcaattttgaaaccaaataaataacaataacaatatcaactaccattatca |
101 |
Q |
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| T |
18319972 |
gaggaaaagacgacaggtatacatagaatcaaacaaattgcgacgcgcgtcaattttgaaaccaaataaataacaataacaatatcaactaccattatca |
18319873 |
T |
|
| Q |
102 |
aattgcctcaaattaatctcattcacgaattcacaaacacacagaaaaatatgggcgtggtgataatcgacggcaccaccgtgcgagacttcatcgccga |
201 |
Q |
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| T |
18319872 |
aattgcctcaaattaatctcattcacgaattcacaaacacacagaaaaatatgggcgtggtgataatcgacggcaccaccgtgcgagacttcatcgccga |
18319773 |
T |
|
| Q |
202 |
cgatacacatttcacaaacagcatcaacgaacaattcacctccctcgatctgaacaacgacggcgttctatcacgcgccgagcttcgcaaagcattcgaa |
301 |
Q |
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| T |
18319772 |
cgatacacatttcacaaacagcatcaacgaacaattcacctccctcgatctgaacaacgacggcgttctatcacgcgccgagcttcgcaaagcattcgaa |
18319673 |
T |
|
| Q |
302 |
tccatgagactaatcgaatctcatttcggcatcgacgtaacaaccccgccggagcaacttacgcgcctctatgactccgttttcgatactttcgacggtg |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
18319672 |
tccatgagactaatcgaatctcatttcggcatcgacgtaacaaccccgccggagcaactcacgcgcctctatgactccgttttcgatactttcgacggcg |
18319573 |
T |
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| Q |
402 |
atggaagcgggagtgttgatcgtgaagagtttaagaatgagatgaagaagattatgcttgctatagctgatggattgggttcttcgcctattcagatggt |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
18319572 |
atggaagcgggagtgttgatcgtgaagagtttaagaatgagatgaagaagattatgcttgctattgctgatggattaggttcttcgcctattcagatggt |
18319473 |
T |
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| Q |
502 |
tcttgaagatgatgatga |
519 |
Q |
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| T |
18319472 |
tcttgaagatgatgatga |
18319455 |
T |
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