View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3440_low_21 (Length: 238)

Name: NF3440_low_21
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3440_low_21
NF3440_low_21
[»] chr6 (7 HSPs)
chr6 (1-196)||(2817162-2817357)
chr6 (79-193)||(2801277-2801392)
chr6 (67-196)||(31597514-31597643)
chr6 (42-193)||(342910-343064)
chr6 (50-196)||(30326647-30326792)
chr6 (40-101)||(24396859-24396920)
chr6 (112-195)||(2248747-2248830)
[»] chr1 (8 HSPs)
chr1 (40-199)||(49805957-49806116)
chr1 (72-196)||(27262735-27262859)
chr1 (48-141)||(26761214-26761308)
chr1 (38-142)||(44697992-44698096)
chr1 (151-199)||(52698507-52698554)
chr1 (87-195)||(50015549-50015657)
chr1 (49-199)||(7444887-7445036)
chr1 (66-142)||(11451852-11451928)
[»] chr3 (6 HSPs)
chr3 (38-141)||(43767251-43767354)
chr3 (38-199)||(24487696-24487857)
chr3 (48-192)||(54457446-54457590)
chr3 (38-198)||(31732064-31732224)
chr3 (73-189)||(53248603-53248719)
chr3 (151-199)||(38094344-38094392)
[»] chr8 (11 HSPs)
chr8 (42-142)||(10409685-10409785)
chr8 (79-138)||(24585828-24585887)
chr8 (39-179)||(32615798-32615938)
chr8 (38-196)||(13521699-13521856)
chr8 (39-196)||(13611234-13611390)
chr8 (72-193)||(39900259-39900378)
chr8 (42-138)||(29912106-29912200)
chr8 (42-139)||(41570007-41570104)
chr8 (72-137)||(28626689-28626754)
chr8 (38-179)||(42964747-42964887)
chr8 (38-142)||(7859166-7859270)
[»] chr4 (6 HSPs)
chr4 (80-191)||(5497749-5497860)
chr4 (38-142)||(23568038-23568142)
chr4 (80-129)||(37177164-37177213)
chr4 (88-197)||(51834745-51834854)
chr4 (42-118)||(26009749-26009825)
chr4 (112-185)||(37626976-37627049)
[»] chr2 (9 HSPs)
chr2 (48-199)||(11074492-11074642)
chr2 (42-141)||(37743982-37744083)
chr2 (73-141)||(8701041-8701109)
chr2 (123-199)||(38788769-38788845)
chr2 (55-199)||(40141938-40142081)
chr2 (153-199)||(7669930-7669976)
chr2 (48-137)||(16011848-16011937)
chr2 (47-127)||(8741037-8741117)
chr2 (80-141)||(34335021-34335081)
[»] chr5 (5 HSPs)
chr5 (41-142)||(40323822-40323923)
chr5 (65-196)||(9784383-9784509)
chr5 (150-196)||(41360880-41360926)
chr5 (40-142)||(1863067-1863169)
chr5 (81-137)||(6562633-6562689)
[»] chr7 (4 HSPs)
chr7 (48-142)||(6707638-6707732)
chr7 (75-193)||(47188417-47188534)
chr7 (169-199)||(28517832-28517862)
chr7 (89-199)||(24423446-24423555)
[»] scaffold0074 (1 HSPs)
scaffold0074 (40-131)||(29749-29840)


Alignment Details
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 2817162 - 2817357
Alignment:
Q  1 aatattgaatgcgttggggtgtatttcaannnnnnnnagggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatct 100  Q
    ||||||||||||||||||||||||||||         ||||||||  |||||| | |||||| ||||||| ||||||||||||||||| ||||||| ||     
T  2817162 aatattgaatgcgttggggtgtatttca-ttttttttagggaaatgctaacaaatacccttatagcacttgataagaggtttaaaatagaaattttttcc 2817260  T
Q  101 tgaaatttatttattcaacacgttaaaacatcaaaaagtaac-nnnnnnnacataaaagttatcaactgtttccattttttgaatccttaacaagtg 196  Q
    || ||||| |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| ||||||| |||||||||||||||    
T  2817261 tggaatttgtttattcaacacgttaaaacatcaaaaagtaactattttttacataaaagttatcaactgtttctattttttaaatccttaacaagtg 2817357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 2801277 - 2801392
Alignment:
Q  79 gtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaac-nnnnnnnacataaaagttatcaactgtttccattt 177  Q
    ||||||||| |||| ||| ||||||||||||| |||||||||| ||||||||| ||||||||||        |||||||||||||||| |||||| ||||    
T  2801277 gtttaaaatgaaaactttgtcttgaaatttatgtattcaacacattaaaacattaaaaagtaacttttttctacataaaagttatcaattgtttctattt 2801376  T
Q  178 tttgaatccttaacaa 193  Q
    |||||||| |||||||    
T  2801377 tttgaatcattaacaa 2801392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 196
Target Start/End: Complemental strand, 31597643 - 31597514
Alignment:
Q  67 actttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnnnnacataaaagttatcaac 166  Q
    |||| ||||||| ||||||||  ||||||| ||||||||||| |  ||||||||| ||||||||| ||||||||||       ||||||||||||| ||     
T  31597643 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaacattaaaaagtaactttttctacataaaagttataaat 31597544  T
Q  167 tgtttccattttttgaatccttaacaagtg 196  Q
    |||||  ||||||| |||||||||||||||    
T  31597543 tgtttttattttttaaatccttaacaagtg 31597514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 193
Target Start/End: Original strand, 342910 - 343064
Alignment:
Q  42 aaatattaacaagtgcccttaga---gcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaag 138  Q
    |||| ||||||||||||||||||   | |||| |||| | ||||||||| |||||||| | ||| ||||||| |||||||||| || |||||| |||||     
T  342910 aaatgttaacaagtgcccttagaagggtacttgataaaaagtttaaaatgaaaattttgttttggaatttatgtattcaacacattgaaacattaaaaaa 343009  T
Q  139 taacnnnnnnnacataaaagttatcaactgtttccattttttgaatccttaacaa 193  Q
    ||||        ||||||||||||||| |||||| |||||||||||| |||||||    
T  343010 taactttttatgcataaaagttatcaattgtttctattttttgaatctttaacaa 343064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 30326647 - 30326792
Alignment:
Q  50 acaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnnnn 149  Q
    |||||||||||||  ||| || |||||| |||||||||  |||||||||||||  |||| | |||||||||| || |||||||||| |  |||           
T  30326647 acaagtgcccttaaggcatttgataagaagtttaaaatggaaattttatcttgggatttgtgtattcaacacattgaaacatcaaagaacaactttttct 30326746  T
Q  150 acataaaagttatcaactgtttccattttttgaatccttaacaagtg 196  Q
    |||| ||||||||||| |||| ||| ||||| |||||||||||||||    
T  30326747 acatgaaagttatcaattgttccca-tttttaaatccttaacaagtg 30326792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 24396920 - 24396859
Alignment:
Q  40 ggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatctt 101  Q
    |||||| ||||||||||||||||| |||||| |||| | ||| |||||| ||||||||||||    
T  24396920 ggaaatgttaacaagtgcccttagggcacttgataaaaagttgaaaatagaaattttatctt 24396859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 2248747 - 2248830
Alignment:
Q  112 tattcaacacgttaaaacatcaaaaagtaacnnnnnnnacataaaagttatcaactgtttccattttttgaatccttaacaagt 195  Q
    |||||||||| || |||||| ||||||||||       |||| ||| ||||||  ||||||| |||||||||||||||||||||    
T  2248747 tattcaacacattgaaacattaaaaagtaactttttcaacatcaaacttatcatttgtttcctttttttgaatccttaacaagt 2248830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 199
Target Start/End: Complemental strand, 49806116 - 49805957
Alignment:
Q  40 ggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagt 139  Q
    ||||||||||| ||||| ||||||  ||||| ||||||||||||||||||||||||| ||||||||||| |  ||||||||| |||||| || |||||||    
T  49806116 ggaaatattaataagtgtccttaggacacttgataagaggtttaaaataaaaattttgtcttgaaatttgtgcattcaacacattaaaatataaaaaagt 49806017  T
Q  140 aacnnnnnnnacataaaagttatcaactgtttccattttttgaatccttaacaagtgccc 199  Q
    |||       ||||||||||||| || |||||| ||||||| |||| |||||| ||||||    
T  49806016 aactttttctacataaaagttataaattgtttctattttttaaatctttaacatgtgccc 49805957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 27262859 - 27262735
Alignment:
Q  72 ataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnnnnacataaaagttatcaactgttt 171  Q
    |||||| |||||||||  ||||||| ||||  ||||| | |||||||||| ||||||||| |||||||||        |||||||||||||||| |||||    
T  27262859 ataagaagtttaaaatggaaattttgtcttagaatttgtgtattcaacacattaaaacattaaaaagtaattttttctacataaaagttatcaattgttt 27262760  T
Q  172 ccattttttgaatccttaacaagtg 196  Q
    | |||||||||||||||||||||||    
T  27262759 ctattttttgaatccttaacaagtg 27262735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 26761308 - 26761214
Alignment:
Q  48 taacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatc-aaaaagtaa 141  Q
    |||||| |||| |||| ||| || |||||||||||||||| ||||||||||||| |||||| | |||||||||| |||||||||| |||||||||    
T  26761308 taacaaatgcctttagggcatttgataagaggtttaaaatgaaaattttatcttaaaatttgtgtattcaacacattaaaacatcgaaaaagtaa 26761214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 44697992 - 44698096
Alignment:
Q  38 agggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaa 137  Q
    ||||||||| |||||||||||||||| |||||| |||| | ||||||| |  || |||||||||| || || | |||||||||  || |||||| |||||    
T  44697992 agggaaatactaacaagtgcccttagggcacttgataataagtttaaagtggaagttttatcttggaagttgtgtattcaacatattgaaacattaaaaa 44698091  T
Q  138 gtaac 142  Q
    |||||    
T  44698092 gtaac 44698096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 52698507 - 52698554
Alignment:
Q  151 cataaaagttatcaactgtttccattttttgaatccttaacaagtgccc 199  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  52698507 cataaaagttatcaattgtttccatttttt-aatccttaacaagtgccc 52698554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 50015657 - 50015549
Alignment:
Q  87 taaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnnnnacataaaagttatcaactgtttccattttttgaatcc 186  Q
    |||||| ||| ||||| ||||| | |||||||||| || ||| |||||||||||||       ||| |||| ||||||| |||||| ||||||||||| |    
T  50015657 taaaaactttgtcttggaatttgtatattcaacacattcaaaaatcaaaaagtaactttttatacaaaaaatttatcaattgtttctattttttgaattc 50015558  T
Q  187 ttaacaagt 195  Q
    |||||||||    
T  50015557 ttaacaagt 50015549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 7444887 - 7445036
Alignment:
Q  49 aacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnnn 148  Q
    ||||||||||||||| |||||| ||||||  || |||  | ||| |||||||||| |||| | |||||||||| || ||| ||||||||| |||          
T  7444887 aacaagtgcccttagggcacttgataagaaattcaaagaagaaactttatcttgagatttgtgtattcaacacattgaaatatcaaaaagcaacttttta 7444986  T
Q  149 nacataaaagttatcaactgtttccattttttgaatccttaacaagtgccc 199  Q
     |||| ||||||||||| | |||| | |||| ||||| |||||||||||||    
T  7444987 tacatgaaagttatcaattatttcta-ttttagaatctttaacaagtgccc 7445036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 11451852 - 11451928
Alignment:
Q  66 cactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaac 142  Q
    ||||| |||| | ||||||| || ||||||||| |||| | |||| ||||||||||||| ||| || ||||||||||    
T  11451852 cacttgataaaaagtttaaagtagaaattttatattgagagttatgtattcaacacgttgaaatattaaaaagtaac 11451928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 43767251 - 43767354
Alignment:
Q  38 agggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaa 137  Q
    |||||||| ||||||||||||||||| ||| || |||||||||||||||| |||||||| ||||||||||| |  ||||||||| |||||||||||||||    
T  43767251 agggaaatgttaacaagtgcccttagggcaattgataagaggtttaaaatgaaaattttgtcttgaaatttgtgcattcaacacattaaaacatcaaaaa 43767350  T
Q  138 gtaa 141  Q
    ||||    
T  43767351 gtaa 43767354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 24487696 - 24487857
Alignment:
Q  38 agggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaa 137  Q
    |||||||| ||||||||| ||||||  | |||| ||||||| ||||||||  ||||||| |||||| || | || | ||||||  |||||||||||||||    
T  24487696 agggaaatgttaacaagtacccttaaggaacttgataagagttttaaaatggaaattttgtcttgacatatgttcactcaacatattaaaacatcaaaaa 24487795  T
Q  138 gtaacnnnnnnnacataaaagttatcaactgtttccattttttgaatccttaacaagtgccc 199  Q
     ||||       |||||||||||||||| |||||| |||||||||||| |||||||||||||    
T  24487796 ttaactttttctacataaaagttatcaattgtttctattttttgaatcattaacaagtgccc 24487857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 54457446 - 54457590
Alignment:
Q  48 taacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnn 147  Q
    |||||||||| |||||||||||| |||||| | |||||||||||| |||||||| |||||||| |||||||||| || ||| ||||||||| |||         
T  54457446 taacaagtgctcttagagcacttaataagaagattaaaataaaaaatttatcttaaaatttatgtattcaacacattgaaatatcaaaaagcaactcttt 54457545  T
Q  148 nnacataaaagttatcaactgtttccattttttgaatccttaaca 192  Q
      |||  ||||||||||  ||||| ||||| ||||||||||||||    
T  54457546 ctacaacaaagttatcagttgttttcatttattgaatccttaaca 54457590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 31732224 - 31732064
Alignment:
Q  38 agggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaa 137  Q
    ||||||||  |||||||||||||| | |||||  |||||| |  ||||||  || ||||||||||  |||| | |||||||||  || ||||||||||||    
T  31732224 agggaaatgctaacaagtgcccttggggcactagataagaagcctaaaatggaagttttatcttgggatttgtgtattcaacatattgaaacatcaaaaa 31732125  T
Q  138 gtaacnnnnnnnacataaaagttatcaactgtttccattttttgaatccttaacaagtgcc 198  Q
    | |||       |||| |||||||| || | ||||||||||||||||||||||||||||||    
T  31732124 gcaactttttcaacatgaaagttatgaattatttccattttttgaatccttaacaagtgcc 31732064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 53248603 - 53248719
Alignment:
Q  73 taagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnnnnacataaaagttatcaactgtttc 172  Q
    ||||| |||| ||||  ||| ||| ||||||||||| | |||||||||  |||||| | |||||||||||       |||||||||||||||| ||||||    
T  53248603 taagaagttttaaatggaaactttgtcttgaaatttgtatattcaacatattaaaaaaccaaaaagtaactttttatacataaaagttatcaattgtttc 53248702  T
Q  173 cattttttgaatcctta 189  Q
     ||||||||||||||||    
T  53248703 tattttttgaatcctta 53248719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 38094344 - 38094392
Alignment:
Q  151 cataaaagttatcaactgtttccattttttgaatccttaacaagtgccc 199  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  38094344 cataaaagttatcaattgtttctattttttgaatccttaataagtgccc 38094392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 10409785 - 10409685
Alignment:
Q  42 aaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaa 141  Q
    |||||||||||||||||||||   ||||| ||||||||||||||||| ||| |||||||||||| || | |||| ||||| |||||||||||||||||||    
T  10409785 aaatattaacaagtgcccttaagacacttgataagaggtttaaaatagaaactttatcttgaaacttgtgtatttaacacattaaaacatcaaaaagtaa 10409686  T
Q  142 c 142  Q
    |    
T  10409685 c 10409685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 24585828 - 24585887
Alignment:
Q  79 gtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaag 138  Q
    |||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  24585828 gtttaaaatagaaattttatcttgaaatttgtttattcaacacattaaaacatcaaaaag 24585887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 32615798 - 32615938
Alignment:
Q  39 gggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaag 138  Q
    ||||||| ||||||||||||||||| |||||| |||||| ||||||| || ||||||||||||| ||||  | |||||||||| || |||||| |||||     
T  32615798 gggaaatgttaacaagtgcccttagggcacttgataagaagtttaaagtagaaattttatcttggaattcgtgtattcaacacattgaaacattaaaaaa 32615897  T
Q  139 taacnnnnnnnacataaaagttatcaactgtttccattttt 179  Q
     |||       |||| ||||||||||| |||||| ||||||    
T  32615898 caactttatttacatgaaagttatcaattgtttctattttt 32615938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 196
Target Start/End: Complemental strand, 13521856 - 13521699
Alignment:
Q  38 agggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaa 137  Q
    |||||||| ||||||||||| ||||| |||| | |||||| ||||||| || ||||||||| ||||||||| | ||||| |||| || |||||| |||||    
T  13521856 agggaaatgttaacaagtgctcttagggcacctgataagaagtttaaagtagaaattttattttgaaatttgtgtattctacacattgaaacattaaaaa 13521757  T
Q  138 gtaacnnnnnnnacataaaagttatcaactgtttccattttttgaatccttaacaagtg 196  Q
     |||        |||| ||||||||||| | |||| | |||||| ||||||||||||||    
T  13521756 ataattttatttacatgaaagttatcaattatttcta-tttttgtatccttaacaagtg 13521699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 196
Target Start/End: Complemental strand, 13611390 - 13611234
Alignment:
Q  39 gggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaag 138  Q
    ||||||| ||||||||||| ||||| |||| | |||||| ||||||| || ||||||||| ||||||||| | ||||| |||| || |||||| |||||     
T  13611390 gggaaatgttaacaagtgctcttagggcacctgataagaagtttaaagtagaaattttattttgaaatttgtgtattctacacattgaaacattaaaaaa 13611291  T
Q  139 taacnnnnnnnacataaaagttatcaactgtttccattttttgaatccttaacaagtg 196  Q
    |||        |||| ||||||||||| | |||| | |||||| ||||||||||||||    
T  13611290 taattttatttacatgaaagttatcaattatttcta-tttttgtatccttaacaagtg 13611234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 39900378 - 39900259
Alignment:
Q  72 ataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnnnnacataaaagttatcaactgttt 171  Q
    ||||||||||||||||  |||   | ||||||||||| |  ||||||||| |||||||||||||||||||        |||||||||||||||| | |||    
T  39900378 ataagaggtttaaaatggaaaaaatttcttgaaatttgtacattcaacacattaaaacatcaaaaagtaa--ttttttacataaaagttatcaattattt 39900281  T
Q  172 ccattttttgaatccttaacaa 193  Q
    | ||||||||||||||||||||    
T  39900280 ctattttttgaatccttaacaa 39900259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 29912106 - 29912200
Alignment:
Q  42 aaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaag 138  Q
    |||| ||||||||||||||  | |||||| |||||| ||||||| || |||||||||||| |||||| | |||||||| | || |||||||||||||    
T  29912106 aaatgttaacaagtgccct--gggcacttgataagaagtttaaagtagaaattttatcttaaaatttgtgtattcaactcattgaaacatcaaaaag 29912200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 41570007 - 41570104
Alignment:
Q  42 aaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagt 139  Q
    |||| |||||| ||| ||||||| ||||| ||||||  |||||| || |||||||||||||  |||||| |||||||||| || ||| ||||||||||    
T  41570007 aaatgttaacaggtgtccttagaacacttgataagaaatttaaagtagaaattttatcttgggatttatgtattcaacacattgaaatatcaaaaagt 41570104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 28626754 - 28626689
Alignment:
Q  72 ataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaa 137  Q
    |||||| ||||||| |||||| ||||||||||||||||| | ||||| || || ||||||||||||    
T  28626754 ataagaagtttaaagtaaaaaatttatcttgaaatttatgtcttcaatacattgaaacatcaaaaa 28626689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 42964747 - 42964887
Alignment:
Q  38 agggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaa 137  Q
    ||||||||  |||||||| ||| ||| |||||| |||||| ||||||| |  |||||||||||||  | || | |||||||||| || ||||||||||||    
T  42964747 agggaaatgctaacaagttcccctagggcacttgataagaagtttaaagtggaaattttatcttggga-ttgtgtattcaacacattgaaacatcaaaaa 42964845  T
Q  138 gtaacnnnnnnnacataaaagttatcaactgtttccattttt 179  Q
     ||||       |||| ||||||||||| | |||||||||||    
T  42964846 ataactttttctacatgaaagttatcaattatttccattttt 42964887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 7859270 - 7859166
Alignment:
Q  38 agggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaa 137  Q
    ||||||||  ||||||||||||||||  | ||| |||| | ||||||| |   |||||||||||  || || | |||||||||| ||||||||| |||||    
T  7859270 agggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacacattaaaacattaaaaa 7859171  T
Q  138 gtaac 142  Q
    |||||    
T  7859170 gtaac 7859166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 191
Target Start/End: Original strand, 5497749 - 5497860
Alignment:
Q  80 tttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnnnnacataaaagttatcaactgtttccattttt 179  Q
    ||||||||  |||||||||||| |||||||| |||| || ||  | |||||||||||||||||       |||||||||||||||||||||||||||||     
T  5497749 tttaaaatggaaattttatcttaaaatttatgtatttaatacaatgaaacatcaaaaagtaactttttctacataaaagttatcaactgtttccattttc 5497848  T
Q  180 tgaatccttaac 191  Q
    ||||||||||||    
T  5497849 tgaatccttaac 5497860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 23568142 - 23568038
Alignment:
Q  38 agggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaa 137  Q
    |||||||| |||||||||| |||  | |||||| |||||| |||| ||||  ||| ||||||||||||||| | ||||||| || || ||| ||||||||    
T  23568142 agggaaatgttaacaagtgtcctaggggcacttgataagaagttttaaatggaaactttatcttgaaatttgtatattcaatacattgaaaaatcaaaaa 23568043  T
Q  138 gtaac 142  Q
    |||||    
T  23568042 gtaac 23568038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 37177213 - 37177164
Alignment:
Q  80 tttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaac 129  Q
    |||||| |||||||| ||||||||||||| | ||||||||||||||||||    
T  37177213 tttaaattaaaaattgtatcttgaaatttgtatattcaacacgttaaaac 37177164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 51834854 - 51834745
Alignment:
Q  88 aaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnnnnacataaaagttatcaactgtttccattttttgaatcct 187  Q
    ||||||||||||||||||||| | |||||||| |||| ||||| ||||||| |||       |||| ||||||||||  | |||| |||||||  ||| |    
T  51834854 aaaaattttatcttgaaatttgtgtattcaactcgttgaaacaccaaaaagcaactttatctacatgaaagttatcatttatttctattttttttatcat 51834755  T
Q  188 taacaagtgc 197  Q
    ||||||||||    
T  51834754 taacaagtgc 51834745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 26009825 - 26009749
Alignment:
Q  42 aaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaa 118  Q
    |||| ||||||||||||||||   ||||| ||||||  |||||| |||||| ||||||||| ||||| | |||||||    
T  26009825 aaatgttaacaagtgcccttaagacacttgataagaaatttaaagtaaaaactttatcttggaatttgtgtattcaa 26009749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 37626976 - 37627049
Alignment:
Q  112 tattcaacacgttaaaacatcaaaaagtaacnnnnnnnacataaaagttatcaactgtttccattttttgaatc 185  Q
    |||||||||| || |||||| ||||||||||       |||||||||||||||| |||||| ||||||| ||||    
T  37626976 tattcaacacatttaaacattaaaaagtaactttttctacataaaagttatcaattgtttctattttttaaatc 37627049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 11074642 - 11074492
Alignment:
Q  48 taacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnn 147  Q
    ||||||||||||||||||||||| |||||| ||||||| || ||||||| |||||  |||| | |||||||||| || |||||| |||||| |||         
T  11074642 taacaagtgcccttagagcacttgataagaagtttaaagtagaaattttttcttgggatttgtgtattcaacacattgaaacataaaaaagcaacttttt 11074543  T
Q  148 nnacataaaagttatcaactgtttccattttttgaatccttaacaagtgccc 199  Q
       |||  |||||||| | |||||||| ||||||||||||||||||||||||    
T  11074542 ctgcatggaagttatctattgtttcca-tttttgaatccttaacaagtgccc 11074492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 37743982 - 37744083
Alignment:
Q  42 aaatattaacaagtgcccttagagcacttt--ataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagt 139  Q
    ||||| |||||| | |||||| | ||||||  |||||| ||||||||||||||||||||||| |||||||| ||||||| |  |||||||||||||| ||    
T  37743982 aaatactaacaattacccttaaatcacttttgataagaagtttaaaataaaaattttatcttaaaatttatgtattcaatatattaaaacatcaaaaggt 37744081  T
Q  140 aa 141  Q
    ||    
T  37744082 aa 37744083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 8701041 - 8701109
Alignment:
Q  73 taagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaa 141  Q
    ||||| ||||||||||||||||||||||| ||| |||| |||||||||| ||||||||  |||||||||    
T  8701041 taagaagtttaaaataaaaattttatcttaaaaattatgtattcaacacattaaaacaataaaaagtaa 8701109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 38788769 - 38788845
Alignment:
Q  123 ttaaaacatcaaaaagtaacnnnnnnnacataaaagttatcaactgtttccattttttgaatccttaacaagtgccc 199  Q
    ||||||||||||||||||||       |||| |||||| |||| |||||| ||||||||||||||||||||||||||    
T  38788769 ttaaaacatcaaaaagtaactttttctacatgaaagttgtcaattgtttctattttttgaatccttaacaagtgccc 38788845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 199
Target Start/End: Complemental strand, 40142081 - 40141938
Alignment:
Q  55 tgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnnnnacata 154  Q
    |||||| |||||| || |||||| ||||||| |||||| |||||||| |||||| | |||||||| | || ||||| ||||||| |||       ||||     
T  40142081 tgccctaagagcagttgataagaagtttaaagtaaaaaatttatcttaaaatttgtatattcaactcattgaaacaccaaaaagcaactttatctacatg 40141982  T
Q  155 aaagttatcaactgtttccattttttgaatccttaacaagtgccc 199  Q
    |||||||| |  |||||| ||||||| | ||||||||||||||||    
T  40141981 aaagttataatttgtttctattttttta-tccttaacaagtgccc 40141938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 7669930 - 7669976
Alignment:
Q  153 taaaagttatcaactgtttccattttttgaatccttaacaagtgccc 199  Q
    ||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  7669930 taaaacttatcaattgtttcaattttttgaatccttaacaagtgccc 7669976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 16011937 - 16011848
Alignment:
Q  48 taacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaa 137  Q
    ||||||||||||||||||||  |  ||| | ||||||| || || |||||||||| ||||||| |||| ||||| |||||| ||||||||    
T  16011937 taacaagtgcccttagagcatctgttaataagtttaaagtagaagttttatcttggaatttatgtattaaacacattaaaaaatcaaaaa 16011848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 8741117 - 8741037
Alignment:
Q  47 ttaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaa 127  Q
    |||||||||||| |||   |||||||||| | |||||||||| ||||||||||||| ||||| | ||||||| || |||||    
T  8741117 ttaacaagtgcctttacgacactttataacaagtttaaaatagaaattttatcttggaatttgtgtattcaatacattaaa 8741037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 34335021 - 34335081
Alignment:
Q  80 tttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaa 141  Q
    |||||| || |||||||||||| |||||||| ||||||| || || ||||||||||||||||    
T  34335021 tttaaagtagaaattttatcttaaaatttatatattcaa-acattgaaacatcaaaaagtaa 34335081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 40323822 - 40323923
Alignment:
Q  41 gaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagta 140  Q
    ||||| ||||||| ||||||||  |||||| |||| |||||||||||  ||| |||||||||||| || | |||| ||||| ||||||||||||||||||    
T  40323822 gaaatgttaacaaatgcccttatggcacttgataataggtttaaaatggaaactttatcttgaaacttgtgtattgaacacattaaaacatcaaaaagta 40323921  T
Q  141 ac 142  Q
    ||    
T  40323922 ac 40323923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 9784509 - 9784383
Alignment:
Q  65 gcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnnnnacataaaagttatca 164  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||| |  |||  |||| |||||||||||||||||          |||||||||||||||    
T  9784509 gcacttgataagaggtttaaaatagaaattttgtcttgaaatttgtgcattttacacattaaaacatcaaaaagt-----tttatacataaaagttatca 9784415  T
Q  165 actgtttccattttttgaatccttaacaagtg 196  Q
    | | |||| ||||||||||| |||||||||||    
T  9784414 attatttctattttttgaattcttaacaagtg 9784383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 41360926 - 41360880
Alignment:
Q  150 acataaaagttatcaactgtttccattttttgaatccttaacaagtg 196  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  41360926 acataaaagttatcaattgttttcattttttgaatctttaacaagtg 41360880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 1863067 - 1863169
Alignment:
Q  40 ggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagt 139  Q
    |||||| |||||||||| |||| | ||||||  ||||| |||||||| | ||||||||||||| || | || |||||||||| || |||  | |||||||    
T  1863067 ggaaatgttaacaagtgtccttggcgcacttgttaagaagtttaaaaaataaattttatcttggaaatgatgtattcaacacattgaaagtttaaaaagt 1863166  T
Q  140 aac 142  Q
    |||    
T  1863167 aac 1863169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 6562633 - 6562689
Alignment:
Q  81 ttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaa 137  Q
    ||||| |||||||||||| || |||||| | |||||||||| || ||||||||||||    
T  6562633 ttaaagtaaaaattttattttaaaatttgtgtattcaacacattgaaacatcaaaaa 6562689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 6707732 - 6707638
Alignment:
Q  48 taacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaac 142  Q
    |||||| |||||| |||  ||||||||||| ||||||| || |||||||| ||| | |||||| |||||||||| ||||||||| ||||| ||||    
T  6707732 taacaaatgccctaagataactttataagaagtttaaagtagaaattttaccttaatatttatgtattcaacacattaaaacattaaaaaataac 6707638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 193
Target Start/End: Original strand, 47188417 - 47188534
Alignment:
Q  75 agaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnnnnacataaaagttatcaactgtttcca 174  Q
    |||| ||||||||  ||||||| |||| |||||| |  | ||||||| |||||| |||||||||||||       ||||||||||||| || |||||| |    
T  47188417 agagttttaaaatggaaattttgtcttaaaatttgtgaactcaacacattaaaatatcaaaaagtaactttttctacataaaagttattaattgtttcta 47188516  T
Q  175 ttttttgaatccttaacaa 193  Q
     ||||||||||||||||||    
T  47188517 -tttttgaatccttaacaa 47188534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 199
Target Start/End: Original strand, 28517832 - 28517862
Alignment:
Q  169 tttccattttttgaatccttaacaagtgccc 199  Q
    |||||||||||||||||||||||||||||||    
T  28517832 tttccattttttgaatccttaacaagtgccc 28517862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 199
Target Start/End: Original strand, 24423446 - 24423555
Alignment:
Q  89 aaaattttatcttgaaatttatttattcaacacgttaaaacatcaaaaagtaacnnnnnnnacataaaagttatcaactgtttccattttttgaatcctt 188  Q
    ||||||||||||||| |||||| |||||||||| || ||||| ||||||  |||       |||| ||||| ||| | ||||||||||| || |||||||    
T  24423446 aaaattttatcttgagatttatgtattcaacacattgaaacaccaaaaaacaactttttctacatgaaagtcatcgattgtttccatttatt-aatcctt 24423544  T
Q  189 aacaagtgccc 199  Q
    ||||| |||||    
T  24423545 aacaaatgccc 24423555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 29840 - 29749
Alignment:
Q  40 ggaaatattaacaagtgcccttagagcactttataagaggtttaaaataaaaattttatcttgaaatttatttattcaacacgttaaaacat 131  Q
    |||||| |||| |||||||||||| |||||| |||| | ||| ||| || ||||||||||||| ||||  | |||||||||| || ||||||    
T  29840 ggaaatgttaataagtgcccttagggcacttgataaaaagttgaaagtagaaattttatcttggaattcgtgtattcaacacattgaaacat 29749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University