View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3440_low_23 (Length: 220)
Name: NF3440_low_23
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3440_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 34508905 - 34509098
Alignment:
| Q |
1 |
aaacccatattttgaaattaaagaaatagcatacaattaaaaataaaacagattaactacacttgattaactnnnnnnnn-ggtgaatataatagattac |
99 |
Q |
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| T |
34508905 |
aaacccatattttgaaattaaagaaatagcatagaattaaaaataaaacaaattaactacagttgattaacaaaaaaaaaaggtgcatagaatggattac |
34509004 |
T |
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| Q |
100 |
ctggagagaaaaatccaatgggtttccatggattgaaacaggcatatggagatggggatgatttcgagattcaaatctgaattggaattttctt |
193 |
Q |
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| T |
34509005 |
ctggagagaaaaatccaacgtgtttccacggattgaaacaggcatatggagatggggatgattttgagcagcagatttgaattggaattttctt |
34509098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 44784896 - 44785017
Alignment:
| Q |
39 |
aaaaataaaacagattaactacacttgattaactnnnnnnnnggtgaatataatagattacctggagagaaaaatccaatgggtttccatggattgaaac |
138 |
Q |
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| T |
44784896 |
aaaaataaaacaaattaactacactttattaacaaaaaaaatggtgaatagaatggattacctggagagaaaaatccaacgtgtttccatggattgaaac |
44784995 |
T |
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| Q |
139 |
aggcatatggagatggggatga |
160 |
Q |
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| T |
44784996 |
aggcatgtggagatgcggatga |
44785017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 44619605 - 44619657
Alignment:
| Q |
142 |
catatggagatggggatgatttcgagattcaaatctgaattggaattttctta |
194 |
Q |
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| T |
44619605 |
catatggagatggggatgattttgagtggcagatttgaattggaattttctta |
44619657 |
T |
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