View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3440_low_3 (Length: 515)
Name: NF3440_low_3
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3440_low_3 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 515
Target Start/End: Original strand, 56393365 - 56393863
Alignment:
| Q |
19 |
acactgattaaacatttgggagcggagtggtagcaaggatacgaccacaaactccatccaaatgtgaatccagcccgacnnnnnnnn--taaactcgttg |
116 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |
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| T |
56393365 |
acactgattgaacatttgggagcggagtggtagcaaggatacgaccacgaactccatccaaatgtgaatccagcccagccaaaaaaacataaactcgttg |
56393464 |
T |
|
| Q |
117 |
ggaattaaccatcttgttatacttctc-aacatctttagggcattccatggtacaatcattaatagaatcatactcttgccataacctctgcaatttact |
215 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
56393465 |
ggaattaaccatcttgttatacttctctaacatctttagggcattccatggtacaatcattaatagcatcatactcttgccataacctctgcaatttact |
56393564 |
T |
|
| Q |
216 |
aaagtaagtaataacagatccaccattttgttgagtagagattacctcacgatacaattgatatgctcttgatgcatcttggtttaccgaatacgtctcc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56393565 |
aaagtaagtaataacagatccaccattttgttgagtagagattacc-cacgatacaattgatatgctcttgatgcatcttggtttaccgaatacgtctcc |
56393663 |
T |
|
| Q |
316 |
ttcacggtttcccaaatttcctttgccatagccaagcgaatgaagagggatctggtttctttggtaatagaatccagaagccaagacttgaccaagcagt |
415 |
Q |
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||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
56393664 |
ttcacagtttcccaaatttcctttgtcgtagccaagcgaatgaagagggatctggtttctttggtcatagaatccagaagccaagacttgaccaagcagt |
56393763 |
T |
|
| Q |
416 |
tttcatcttcccatgtttcatattcctcagatttctggtcttttggtgtagcctttgttccggtgacataaccccaacgttttctgcctctgatcttgtt |
515 |
Q |
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| T |
56393764 |
tttcatcttcccatgtttcatattcctcagatttctggtctattggtgtagcctttgttcaggtgacgtaaccccaacgttttctgcctctgatcttgtt |
56393863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 515
Target Start/End: Original strand, 27517603 - 27518101
Alignment:
| Q |
19 |
acactgattaaacatttgggagcggagtggtagcaaggatacgaccacaaactccatccaaatgtgaatccagcccgacnnnnnnnn--taaactcgttg |
116 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |
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| T |
27517603 |
acactgattgaacatttgggagcggagtggtagcaaggatacgaccacgaactccatccaaatgtgaatccagcccagccaaaaaaacataaactcgttg |
27517702 |
T |
|
| Q |
117 |
ggaattaaccatcttgttatacttctcaacatctttagggcattccatggtacaatcattaatagaatcatactcttgccataacctctgcaatttacta |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27517703 |
tgaattagccatcttgttatacttctcaacatctttagggcattccatggtacaatcattaatagcatcatactcttgccataacctctgcaatttacta |
27517802 |
T |
|
| Q |
217 |
aagtaagtaataacagatccaccattttgttgagtagagattacctcacgatacaattgatatgctcttgatgcatcttggtttaccgaatacgtctcct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27517803 |
aagtaagtaataacagatccaccattttgttgagtagagattacctcacgatacaattgatatgctcttgatgcatcttggtttactgaatacgtctcct |
27517902 |
T |
|
| Q |
317 |
tcacggtttcccaaatttcctttgccatagccaagcgaatgaagagggatctggtttctttggtaatagaatccagaagccaagacttgaccaagcagtt |
416 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27517903 |
tcacggtttcccaaatttcctttgtcgtagccaagcgaatgaagagggatctagtttctttggtcatagaatccagaagccaagacttgaccaagcagtt |
27518002 |
T |
|
| Q |
417 |
ttcatcttcccatgtttcatattcctcagatttctggtcttttggtgtagcctttgttccggtgacataaccccaacgttttctgcctctgatcttgtt |
515 |
Q |
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||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| |
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| T |
27518003 |
ttcatcttcccatgtttcatactcctcagatttttagtcttttggtgtagcctttgttctggtgacgtaaccccaatgttttctgcctctgatcttgtt |
27518101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 8192134 - 8192193
Alignment:
| Q |
387 |
atccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcaga |
446 |
Q |
| |
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|||||||||||||||||||||||| || || ||||||||||| ||||||||||| ||||| |
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| T |
8192134 |
atccagaagccaagacttgaccaaacaattctcatcttcccaagtttcatattcatcaga |
8192193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 296
Target Start/End: Original strand, 8191965 - 8192043
Alignment:
| Q |
218 |
agtaagtaataacagatccaccattttgttgagtagagattacctcacgatacaattgatatgctcttgatgcatcttg |
296 |
Q |
| |
|
||||||||| ||| |||||||||| ||||| | |||| |||||||||| ||| | |||||||| ||||||||||||| |
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| T |
8191965 |
agtaagtaacaacggatccaccatcttgtttaatagatattacctcacaataaagctgatatgcctttgatgcatcttg |
8192043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 106 - 515
Target Start/End: Original strand, 40457409 - 40457818
Alignment:
| Q |
106 |
taaactcgttgggaattaaccatcttgttatacttctcaacatctttagggcattccatggtacaatcattaatagaatcatactcttgccataacctct |
205 |
Q |
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||||| ||||| |||||||| | |||||||||||||||||||||||| ||| ||||||||||||| ||| | ||||||||||||||| ||||| | |
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| T |
40457409 |
taaacacgttgagaattaacagtggtgttatacttctcaacatctttagtgcactccatggtacaatttgcaatggcatcatactcttgccacaaccttt |
40457508 |
T |
|
| Q |
206 |
gcaatttactaaagtaagtaataacagatccaccattttgttgagtagagattacctcacgatacaattgatatgctcttgatgcatcttggtttaccga |
305 |
Q |
| |
|
||||| | ||| || |||| | ||| ||||||||||| |||||||| |||| |||||| || ||||||||||| || |||||||||||||| || || |
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| T |
40457509 |
ttaattttccaaaatatataatcatagaaccaccattttgatgagtagaaattatctcacggtataattgatatgccctagatgcatcttggttgactga |
40457608 |
T |
|
| Q |
306 |
atacgtctccttcacggtttcccaaatttcctttgccatagccaagcgaatgaagagggatctggtttctttggtaatagaatccagaagccaagacttg |
405 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||||| ||| ||||||| ||||| ||||| |||||| | |||||||| ||||| || |||||||| ||||| |
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| T |
40457609 |
atacgtctccttgatggtgtcccatatttccttcgccgtagccaaacgaataaagagtgatctgatgtctttggtcatagagtcaagaagccatgactta |
40457708 |
T |
|
| Q |
406 |
accaagcagttttcatcttcccatgtttcatattcctcagatttctggtcttttggtgtagcctttgttccggtgacataaccccaacgttttctgcctc |
505 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||| |||||| |||||||||| |||||||||||| | |||||||||||||||||||||||||| |
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| T |
40457709 |
accaaacagttttcatcctcccatgtttcatactcctcgaatttctcatcttttggtgcagcctttgttccagagacataaccccaacgttttctgcctc |
40457808 |
T |
|
| Q |
506 |
tgatcttgtt |
515 |
Q |
| |
|
||||||||| |
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|
| T |
40457809 |
ggatcttgtt |
40457818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 446
Target Start/End: Complemental strand, 40088806 - 40088576
Alignment:
| Q |
216 |
aaagtaagtaataacagatccaccattttgttgagtagagattacctcacgatacaattgatatgctcttgatgcatcttggtttaccgaatacgtctcc |
315 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||| | |||| |||||||||| ||| | |||||||| ||||||||||||| | || || || |||||| |
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|
| T |
40088806 |
aaagtaagtaacaacggatccaccatcttgtttaatagatattacctcacaataaagctgatatgcctttgatgcatcttgactgacagagtaagtctcc |
40088707 |
T |
|
| Q |
316 |
ttcacggtttcccaaatttcctttgccatagccaagcgaatgaagagggatctggtttctttggtaatagaatccagaagccaagacttgaccaagcagt |
415 |
Q |
| |
|
|| || | |||||| || | ||| || ||| || || ||||| || || || ||||| || || | |||||||||||||||||||||||| || | |
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|
| T |
40088706 |
ttgaccgattcccagatcttcttggctgtaggtaaccggatgaaaagcgacctaacatcttttgtcattgcatccagaagccaagacttgaccaaacaat |
40088607 |
T |
|
| Q |
416 |
tttcatcttcccatgtttcatattcctcaga |
446 |
Q |
| |
|
| ||||||||||| ||||||||||| ||||| |
|
|
| T |
40088606 |
tctcatcttcccaagtttcatattcatcaga |
40088576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 446
Target Start/End: Complemental strand, 4242366 - 4242136
Alignment:
| Q |
216 |
aaagtaagtaataacagatccaccattttgttgagtagagattacctcacgatacaattgatatgctcttgatgcatcttggtttaccgaatacgtctcc |
315 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||| | |||| |||||||||| ||| | |||||||| ||||||||||||| | || || || |||||| |
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|
| T |
4242366 |
aaagtaagtaacaacggatccaccatcttgtttaatagatattacctcacaataaagctgatatgcctttgatgcatcttgactgacagagtaagtctcc |
4242267 |
T |
|
| Q |
316 |
ttcacggtttcccaaatttcctttgccatagccaagcgaatgaagagggatctggtttctttggtaatagaatccagaagccaagacttgaccaagcagt |
415 |
Q |
| |
|
|| || | |||||| || | ||| || ||| || || ||||| || || || ||||| || || | |||||||||||||||||||||||| || | |
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|
| T |
4242266 |
ttgaccgattcccagatcttcttggctgtaggtaaccggatgaaaagcgacctaacatcttttgtcattgcatccagaagccaagacttgaccaaacaat |
4242167 |
T |
|
| Q |
416 |
tttcatcttcccatgtttcatattcctcaga |
446 |
Q |
| |
|
| ||||||||||| ||||||||||| ||||| |
|
|
| T |
4242166 |
tctcatcttcccaagtttcatattcatcaga |
4242136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 495939 - 495880
Alignment:
| Q |
387 |
atccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcaga |
446 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||||||||| ||||||||||| ||||| |
|
|
| T |
495939 |
atccagaagccaagacttgaccaaacaattctcatcttcccaagtttcatattcatcaga |
495880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 8017057 - 8016998
Alignment:
| Q |
387 |
atccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcaga |
446 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||||||||| ||||||||||| ||||| |
|
|
| T |
8017057 |
atccagaagccaagacttgaccaaacaattctcatcttcccaagtttcatattcatcaga |
8016998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 296
Target Start/End: Complemental strand, 8017228 - 8017148
Alignment:
| Q |
216 |
aaagtaagtaataacagatccaccattttgttgagtagagattacctcacgatacaattgatatgctcttgatgcatcttg |
296 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||| | |||| |||||||||| ||| | |||||||| ||||||||||||| |
|
|
| T |
8017228 |
aaagtaagtaacaacggatccaccatcttgtttaatagatattacctcacaataaagctgatatgcctttgatgcatcttg |
8017148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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