View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3440_low_5 (Length: 424)
Name: NF3440_low_5
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3440_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 37468766 - 37468372
Alignment:
| Q |
18 |
actagttgctatagatttcttccactgcaaaatactgtgcagggggaaatggcaaataacaatcaagtgtacgatgat---agacatgttttannnnnnn |
114 |
Q |
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| T |
37468766 |
actagttgctatagatttcttccactgcaaaatactgtgcagggg--aatggcaaataacgatcaagtgtacgatgatgatagacatgttgtattttttt |
37468669 |
T |
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| Q |
115 |
atcttgtaatttattttaaagtaaattatattagttaaatttcccttttgaccagatcatattgacgttatacgatccttaacattagatggttgaatta |
214 |
Q |
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| T |
37468668 |
atcttgtaatttattttaaagtaaattatattagttaaatttcccttttgaccagatcatattgacgttatacgatccttaacattagatggttgaatta |
37468569 |
T |
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| Q |
215 |
cttgttgccataacctaaacttggtcaaaccaaatttctaggatttatgttgttgtaacgtagagaatgtactacgaatatcaggacacaatcgatacaa |
314 |
Q |
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| T |
37468568 |
cttgttgccataacctaaacttggtcaaaccaaatttctaggatttatgtttttgtaacgtagagaatgtcctacgaatatcaatacacaattgatacaa |
37468469 |
T |
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| Q |
315 |
agaaatatgcttaagccagcgaaacatatcataacgagaacatcacgaaggcatattactgctatgcaattgaaattccactaccccaccatcccat |
411 |
Q |
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| T |
37468468 |
agaaatatgcttaagccagcgaaaaatatcataacgagaacatcacgaaggcgtattactgctatgcaattgaaattccattaccccaccatcccat |
37468372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 46937591 - 46937508
Alignment:
| Q |
321 |
atgcttaagccagcgaaacatatcataacgagaacatcacgaaggcatattactgctatgcaattgaaattccactaccccacc |
404 |
Q |
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| T |
46937591 |
atgcttaatcaagcgagaaatattacaacgacaacatcacgaaggcttattactgttatacaattgaaattccactaccccacc |
46937508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 41428244 - 41428308
Alignment:
| Q |
340 |
atatcataacgagaacatcacgaaggcatattactgctatgcaattgaaattccactaccccacca |
405 |
Q |
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| T |
41428244 |
atatcataacgagaacatcacgaaggggtattattgttatg-aattgaaattccactaccccacca |
41428308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 405
Target Start/End: Original strand, 15923090 - 15923171
Alignment:
| Q |
325 |
ttaagccagcgaaacatatcataacgagaacatcacgaaggcata-ttactgctatgcaattgaaattccactaccccacca |
405 |
Q |
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| T |
15923090 |
ttaatccagcgaaaaatatctccacgagaacatcacgaagggaaaattactgctatgcaatggaaattccagtaccgcacca |
15923171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 20390664 - 20390728
Alignment:
| Q |
345 |
ataacgagaacatcacgaaggcatattactgctatgcaattgaaattccactaccccaccatccc |
409 |
Q |
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| T |
20390664 |
ataacaagaatatcacgaaagaattttaccgctatacaattgaaattccattaccccactatccc |
20390728 |
T |
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