View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3440_low_8 (Length: 366)
Name: NF3440_low_8
Description: NF3440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3440_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 142 - 349
Target Start/End: Complemental strand, 41872278 - 41872071
Alignment:
| Q |
142 |
aaaattataaataaaacgtgttgaatcttattatagggttttttctttgtgtttggtagatggaagagtatgttgaaggaaaccttacacgctgctgatg |
241 |
Q |
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| T |
41872278 |
aaaattataaataaaacgtgttgaatcttattatagggtcttttctttgtgtttggtagatggaagagtatgttgaaggaaaccttacacgctgctgatg |
41872179 |
T |
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| Q |
242 |
ttgtcacgtttgactacccttgtcagtttctttccaattcaattcatttcatttatcattcaactacacataaacttatcatgtgtctagctcgacttat |
341 |
Q |
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| T |
41872178 |
ttgtcacgtttgactacccttgtcagtttctttccaattcaattcatttcatttatcattcaactacacataaacttatcatgtgtctagatcgacttat |
41872079 |
T |
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| Q |
342 |
ttgaattt |
349 |
Q |
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|||||||| |
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| T |
41872078 |
ttgaattt |
41872071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 41872402 - 41872311
Alignment:
| Q |
17 |
atcatcaacgccgctaaaacaaccgtcacccgtggttatcttcgctcacggtgccggtgctccttcctcttctgattggatgctaaggttcc |
108 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41872402 |
atcatcaacgccgctgaaacaaccgtcacccgtggttatcttcgctcatggtgccggtgctccttcctcttctgattggatgctaaggttcc |
41872311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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