View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3441_high_11 (Length: 256)

Name: NF3441_high_11
Description: NF3441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3441_high_11
NF3441_high_11
[»] chr1 (3 HSPs)
chr1 (41-256)||(22049-22253)
chr1 (42-254)||(1316-1527)
chr1 (45-256)||(12231-12442)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 41 - 256
Target Start/End: Original strand, 22049 - 22253
Alignment:
Q  41 caaacaaacgattagtatatataaatacaaacataaatgaaaggaaaacaccaacaagatacgataataatatgttaagaaaactttgtatttaattgtt 140  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||        |||||||    
T  22049 caaacaaacgattagtgtatataaatacaaacataaatgaaaggaaaataccaacaagatacgataata---tgttaagaaaact--------aattgtt 22137  T
Q  141 cggatcatccacggtcaaatttatggtgcaaccgattgcagtccataagattaatatagataaaattaatctctcttaatctaatagtctaaacttgcat 240  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22138 cggatcatccatggtcaaatttatggtgcaaccgattgcagaccataagattaatatagataaaattaatctctcttaatctaatagtctaaacttgcat 22237  T
Q  241 gcaacataaatctagt 256  Q
    ||| ||||||||||||    
T  22238 gcaccataaatctagt 22253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 254
Target Start/End: Original strand, 1316 - 1527
Alignment:
Q  42 aaacaaacgattagtatatataaatacaaacataaatgaaaggaaaacaccaacaagatacgataataatatgttaagaaaactttgtatttaattgttc 141  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||  || |||||    
T  1316 aaacacacgataagtatatataaatacaagcataaatgaaaggaaaataccaataagatacgataataatatcttaagaaaactttgtatcaaactgttc 1415  T
Q  142 ggatcatccacggtcaaatttatggtgcaaccgattgcagtccataagattaatatagataaaattaatctctcttaatctaatagtctaaacttgcatg 241  Q
      |||||||||  ||||| | | ||||||||  | || || |||| |||||||||||||||||||| |||| ||||||| |||  ||||||||||| |||    
T  1416 aaatcatccacattcaaa-tcacggtgcaacaaactgtagaccattagattaatatagataaaatttatctttcttaatttaacggtctaaacttggatg 1514  T
Q  242 caacataaatcta 254  Q
    || ||||||||||    
T  1515 caccataaatcta 1527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 45 - 256
Target Start/End: Original strand, 12231 - 12442
Alignment:
Q  45 caaacgattagtatatataaatacaaacataaatgaaaggaaaacaccaacaagatacgataataatatgttaagaaaactttgtatttaattgttcgga 144  Q
    |||||||| |||||||||||||||||   ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||  ||   ||| ||    
T  12231 caaacgataagtatatataaatacaagtgtaaatgaaaggaaaataccaataagatacgataataatatcttaagaaaactttgtatcaaaccattcaga 12330  T
Q  145 tcatccacggtcaaatttatggtgcaaccgattgcagtccataagattaatatagataaaattaatctctcttaatctaatagtctaaacttgcatgcaa 244  Q
    ||||||||  |||||||||   ||||||  | || ||  ||| |||||||||||||||||||| ||||| |||||| |||  ||||||||||| ||||      
T  12331 tcatccacattcaaatttactttgcaacaaactgtagatcattagattaatatagataaaatttatctcgcttaatttaacggtctaaacttggatgcgc 12430  T
Q  245 cataaatctagt 256  Q
    ||||||||||||    
T  12431 cataaatctagt 12442  T

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