View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3441_high_2 (Length: 467)

Name: NF3441_high_2
Description: NF3441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3441_high_2
NF3441_high_2
[»] chr4 (11 HSPs)
chr4 (1-457)||(7615597-7616053)
chr4 (1-456)||(7606584-7607057)
chr4 (1-277)||(7637612-7637888)
chr4 (42-277)||(7629166-7629401)
chr4 (293-457)||(7637414-7637578)
chr4 (46-276)||(7655483-7655710)
chr4 (301-457)||(7628968-7629124)
chr4 (296-450)||(7655748-7655902)
chr4 (46-183)||(39098306-39098443)
chr4 (409-448)||(39098047-39098086)
chr4 (395-451)||(7633703-7633759)
[»] chr7 (5 HSPs)
chr7 (5-457)||(8935403-8935873)
chr7 (62-442)||(8910525-8910919)
chr7 (1-218)||(8934458-8934675)
chr7 (1-209)||(8930003-8930211)
chr7 (353-451)||(8918826-8918924)
[»] chr3 (2 HSPs)
chr3 (46-273)||(8103025-8103252)
chr3 (14-276)||(40146700-40146959)
[»] chr6 (2 HSPs)
chr6 (46-275)||(6501058-6501283)
chr6 (155-183)||(11969547-11969575)
[»] chr8 (1 HSPs)
chr8 (158-276)||(15190642-15190757)


Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 7616053 - 7615597
Alignment:
Q  1 acctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7616053 acctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgac 7615954  T
Q  101 ggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615953 ggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtc 7615854  T
Q  201 atcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttcctttcgtttacggtgatgaattgagttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615853 atcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttcctttcgtttacggtgatgaattgagttt 7615754  T
Q  301 ttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615753 ttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagatt 7615654  T
Q  401 ggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 457  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7615653 ggtaccatcaaaatatcttctctacaagtgcttttaactcacctttggtgctctgtg 7615597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 7607057 - 7606584
Alignment:
Q  1 acctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgac 100  Q
    ||||| |||||| ||||||||||| || || | ||| | | ||| ||| |||||||| |||||||| |||||||| |||||| |||||||||||||||||    
T  7607057 acctctaattgtcgattcattttttgccttcatcggagataaaaactatgaaggcacgtcaaaaccattgttggctgttcaaataacggagctagttgac 7606958  T
Q  101 ggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtc 200  Q
    |||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||  ||||||||     
T  7606957 ggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtg 7606858  T
Q  201 atcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttcctttc------------------gttta 282  Q
     | |||||||||| |||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||                    | |    
T  7606857 gtgatcaaatatccaaacccccaacactagagcgttggtttccaaatggtattcaacttcccatacgatttcctttcactacggagcaacaaaataatca 7606758  T
Q  283 cggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcg 382  Q
    | ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  ||||||| ||||||    
T  7606757 ctgtgatgagttgagtttttcatcgtctaatgaggaaaaactttgtttatcaaataggttatttcatttcacaaaggagaaaatcatacaactgaaatcg 7606658  T
Q  383 aaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgt 456  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7606657 aaaatcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactcacctttggtgctctgt 7606584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 7637888 - 7637612
Alignment:
Q  1 acctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgac 100  Q
    ||||||||||||||||| ||| || |||||| |||  ||   |||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  7637888 acctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgac 7637789  T
Q  101 ggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtc 200  Q
    |||||||| ||||||||||| || ||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  7637788 ggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaattcctgggctgaaatctcacgtagttgttgtc 7637689  T
Q  201 atcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttcctttc 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  7637688 atcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacggcctatacgatttcctttc 7637612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 42 - 277
Target Start/End: Complemental strand, 7629401 - 7629166
Alignment:
Q  42 aaagctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttga 141  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| | |||||||||||| | |||||||||||||| |||||    
T  7629401 aaagctacgaaggcacgtcaaaaccattgttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttga 7629302  T
Q  142 cggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggttt 241  Q
    |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||   || |||||||||    
T  7629301 cggaaagtccgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggttt 7629202  T
Q  242 ccaaatggtgttcaacagcccatacgatttcctttc 277  Q
    ||||||||| ||||||  ||||||||||||||||||    
T  7629201 ccaaatggtattcaacttcccatacgatttcctttc 7629166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 293 - 457
Target Start/End: Complemental strand, 7637578 - 7637414
Alignment:
Q  293 ttgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatg 392  Q
    ||||||||||| |||| |||||||||||||  |||||||||||||||| |||||||||||||||| ||||||||  ||||| | |||||||||||||| |    
T  7637578 ttgagtttttcatcgtttaatgaggaaaaatattgtttatcaaataggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacg 7637479  T
Q  393 atgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 457  Q
    | ||||| || |||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  7637478 aagagatcggcaccaccaaaatatcttctctacaagcacttttaactcacgtttggtgctatgtg 7637414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 46 - 276
Target Start/End: Original strand, 7655483 - 7655710
Alignment:
Q  46 ctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacgga 145  Q
    |||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||| || || ||||| |     ||||||||||| || | |||||||    
T  7655483 ctacgaaggcacatcaaaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtagctgacgga 7655582  T
Q  146 gagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaa 245  Q
     ||||   |||||||||||||||||| ||||||||||| |||||| ||||   ||||||||||||||||||  ||||||| || ||||||||||||||||    
T  7655583 cagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttg---tcatcatcaaatatctaactccccaacgctggagcgttggtttccaa 7655679  T
Q  246 atggtgttcaacagcccatacgatttccttt 276  Q
    ||||  ||||||  || ||||||||||||||    
T  7655680 atggaattcaacgacctatacgatttccttt 7655710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 301 - 457
Target Start/End: Complemental strand, 7629124 - 7628968
Alignment:
Q  301 ttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagatt 400  Q
    |||||| |||||||| |||||||||||||||||||||||  |||| || || ||||| |||||||| || ||||| ||||| ||||||||  | ||||||    
T  7629124 ttcgtcatctaatgatgaaaaactttgtttatcaaatagattattccactttacaaaggagaaaatcgtgcaactgaaatcaaaaatcaacaaagagatt 7629025  T
Q  401 ggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 457  Q
    |||| |||||||||||||||||||||||||||| |||||||  ||||||||| ||||    
T  7629024 ggtaacatcaaaatatcttctctacaagcgcttctaactcatgtttggtgctatgtg 7628968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 296 - 450
Target Start/End: Original strand, 7655748 - 7655902
Alignment:
Q  296 agtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatg 395  Q
    ||||||||||| ||| |||| |||||||| | | ||||| | ||||||||||| || |||||  |||||||  | ||||| ||||||||| ||||||  |    
T  7655748 agtttttcgtcttctgatgacgaaaaactctttctatcagagaggatatttcactttacaaagaagaaaatcatgcaactgaaatcgaaagtcaatgcag 7655847  T
Q  396 agattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtg 450  Q
    |||||| |||||  |||||||||||||||||||||||||||||||| ||||||||    
T  7655848 agattgataccaaaaaaatatcttctctacaagcgcttttaactcatctttggtg 7655902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 39098443 - 39098306
Alignment:
Q  46 ctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacgga 145  Q
    |||||||||||| |||||||| ||| | ||||||||||| || ||||| ||||| |||||||| ||||| | |||  |||| |||||||| || || ||     
T  39098443 ctacgaaggcacatcaaaaccattgcttgcagttcaagttactgagcttgttgatggtattttcattggcttctcaatcaatcatgttgttgtcgatggt 39098344  T
Q  146 gagtctgtgtggcatttcatcaattcatgggctgaaat 183  Q
     ||||  | ||||||||||||||||||||| |||||||    
T  39098343 aagtcgttttggcatttcatcaattcatggtctgaaat 39098306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 39098086 - 39098047
Alignment:
Q  409 caaaatatcttctctacaagcgcttttaactcacctttgg 448  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  39098086 caaaatatcttctttacaagcacttttaactcacctttgg 39098047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 7633759 - 7633703
Alignment:
Q  395 gagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgc 451  Q
    |||||||||||| ||||||||| ||  ||| | ||||||||| ||||||||||||||    
T  7633759 gagattggtaccgtcaaaatatatttcctatatgcgcttttagctcacctttggtgc 7633703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 5 - 457
Target Start/End: Original strand, 8935403 - 8935873
Alignment:
Q  5 ccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggta 104  Q
    |||||||||||||||||||| ||||||||||  |||  ||||||||||||||| |||||||| |||||||||||||||||||| ||| || |||||||||    
T  8935403 ccaattgttgattcattttttgctttaaccgatgttagaagctacgaaggcacatcaaaaccattgttggcagttcaagtaactgagttaattgacggta 8935502  T
Q  105 tttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatca 204  Q
    |||| ||||||||||| || ||||| | |||| |||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  8935503 ttttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaattcttgggctgaaatctcacgtagttgttgtcatca 8935602  T
Q  205 tcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttcctttcgttt------------------acggt 286  Q
    ||||||||||||||| ||||||||||| |||||||||||  |||||||||||| ||| |||||||||||||||  ||                  ||  |    
T  8935603 tcaaatatctaaacctccaacactagaacgttggtttccggatggtgttcaacggccaatacgatttcctttcactttggagcaacaaaagaatcactct 8935702  T
Q  287 gatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaa 386  Q
    ||||  |||||||||| |||||   |||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| || ||||  ||||    
T  8935703 gatgggttgagttttttgtcgttagatgatgaaaaactttgtttctcaaatagaatatttcatttcacaaaagagaaaatcgtacagctgaaattaaaaa 8935802  T
Q  387 tcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 457  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  8935803 tcaatgaagagattggtaccatcaaaatatcttctctacaagcgcctttaactcacctttggtgctgtgtg 8935873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 62 - 442
Target Start/End: Original strand, 8910525 - 8910919
Alignment:
Q  62 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 161  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  8910525 aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatt 8910624  T
Q  162 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 261  Q
    |||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    ||||||| |||    
T  8910625 tcattaattcctgggctgaaatctcacgtagttgttgtcattatcaaatatctaaacccccaacactagagcgttggtttccaaa----gttcaacggcc 8910720  T
Q  262 catacgatttcctttc------------------gtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggata 343  Q
     |||||||||||||||                  | | ||  |||||  ||||||||||| |||  |||||||||||||| |||||||||||||||| ||    
T  8910721 tatacgatttcctttcactttggagcaacaaaaggatcactctgatgggttgagtttttcatcgcttaatgaggaaaaacattgtttatcaaataggtta 8910820  T
Q  344 tttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcac 442  Q
    |||||||||||||| ||||||||  ||||| | |||||||||||||| || ||||| || |||| ||||||||||||||||||||| ||||||||||||    
T  8910821 tttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacgaagagatcggcaccaccaaaatatcttctctacaagcacttttaactcac 8910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8934458 - 8934675
Alignment:
Q  1 acctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgac 100  Q
    |||||||||||||||||||||||| ||||||||||| |||  ||||||||||||||| |||||||| |||||||||||||||||||||||| || |||||    
T  8934458 acctccaattgttgattcattttttgctttaaccggtgttagaagctacgaaggcacatcaaaaccattgttggcagttcaagtaacggagttaattgac 8934557  T
Q  101 ggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtc 200  Q
    |||||||| ||||||||||| || ||||| | |||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8934558 ggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttgtc 8934657  T
Q  201 atcatcaaatatctaaac 218  Q
    |||||||||||| |||||    
T  8934658 atcatcaaatatttaaac 8934675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 8930003 - 8930211
Alignment:
Q  1 acctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgac 100  Q
    |||||||||||||||||||||||| ||||||||||| |||  ||||||||||| ||| |||||||| ||||||||| |||||||||| ||| || |||||    
T  8930003 acctccaattgttgattcattttttgctttaaccggtgttagaagctacgaagtcacatcaaaaccattgttggcatttcaagtaactgagttaattgac 8930102  T
Q  101 ggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtc 200  Q
    |||||||| ||||||||||| || ||||| | |||| |||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  8930103 ggtattttcattggttgctcatttaaccacgctgtcattgatggaaagtctgtgtgacatttcatcaattcatgggctgaaatctcacgtagttgttgtc 8930202  T
Q  201 atcatcaaa 209  Q
    |||||||||    
T  8930203 atcatcaaa 8930211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 451
Target Start/End: Original strand, 8918826 - 8918924
Alignment:
Q  353 acaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgc 451  Q
    ||||| ||||||||  ||||||| ||||| ||| ||||    |||||||||||| ||||||||| ||  ||| | ||||||||| ||||||||||||||    
T  8918826 acaaaggagaaaatcttacaactgaaatcaaaagtcaacacagagattggtaccgtcaaaatatatttcctatatgcgcttttagctcacctttggtgc 8918924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 273
Target Start/End: Complemental strand, 8103252 - 8103025
Alignment:
Q  46 ctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacgga 145  Q
    |||||||||||| ||| |||| ||||| || || ||||| || ||| |||||||||| || ||||||||||   | || |||||||| || ||||| |||    
T  8103252 ctacgaaggcacatcacaaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatgga 8103153  T
Q  146 gagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaa 245  Q
       || |  ||| ||||||| ||||| ||||||||||| |||||| || |||||    |||||| ||| |||| | ||||||| || ||||||||||||     
T  8103152 acttcggcatggtatttcattaattcgtgggctgaaatctcacgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgttggtttccag 8103053  T
Q  246 atggtgttcaacagcccatacgatttcc 273  Q
    ||||| |||||   ||||||||||||||    
T  8103052 atggtattcaatgtcccatacgatttcc 8103025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 40146700 - 40146959
Alignment:
Q  14 gattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattg 113  Q
    |||||||||||  | |||||| | ||| |||  ||||||||||| ||| |||| ||||| || || ||||| || ||| ||||||||||  | || ||||    
T  40146700 gattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagctgtgcaagtgacagagttagttgacggcttcttcattg 40146799  T
Q  114 gttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatc 213  Q
    |||   | || |||||||  || ||||||||||||||    |||| |||||| |||||||||||  |||| || ||| ||||||| ||  ||||| ||||    
T  40146800 gttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaattcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatc 40146896  T
Q  214 taaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttccttt 276  Q
     |||| |  ||| ||||| ||||||||||||| |||| ||||||| |||||||||||||||||    
T  40146897 caaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttt 40146959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 275
Target Start/End: Complemental strand, 6501283 - 6501058
Alignment:
Q  46 ctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacgga 145  Q
    |||||||||||  |||||||| ||| | ||||| ||||| || ||| |||||| |||| | |||||||| |     ||||||||||| |||  ||  |||    
T  6501283 ctacgaaggcatatcaaaaccattgcttgcagtgcaagtgacagagttagttggcggtgtctttattgggtttagattcaaccatgtggtcactggtgga 6501184  T
Q  146 gagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaa 245  Q
     ||||  |||||||||| |||| ||| ||||||||||| |||||| |||||||   | |||||||||| |||| |||| ||||||| |||| ||||||||    
T  6501183 aagtccatgtggcattttatcagttcctgggctgaaatttcacgtggttgttg---taatcaaatatccaaactcccatcactagaacgtt-gtttccaa 6501088  T
Q  246 atggtgttcaacagcccatacgatttcctt 275  Q
    ||| | |||| |   |||||||||||||||    
T  6501087 atgatattcagcgttccatacgatttcctt 6501058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 11969575 - 11969547
Alignment:
Q  155 tggcatttcatcaattcatgggctgaaat 183  Q
    |||||||||||||||||||||||||||||    
T  11969575 tggcatttcatcaattcatgggctgaaat 11969547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 15190642 - 15190757
Alignment:
Q  158 catttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaac 257  Q
    |||||||||||||||  ||||||||| |||||| ||| ||| ||||   ||||||||  ||| |||||||| || ||||  |||||||||||  ||||||    
T  15190642 catttcatcaattcactggctgaaatctcacgtggttcttgccatc---aaatatctgtacctccaacacttgaacgtttatttccaaatggaattcaac 15190738  T
Q  258 agcccatacgatttccttt 276  Q
      |||||||||||||||||    
T  15190739 gtcccatacgatttccttt 15190757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University