View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3441_high_4 (Length: 430)
Name: NF3441_high_4
Description: NF3441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3441_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 54302582 - 54302985
Alignment:
| Q |
19 |
agagtgtacacaattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttcagaaat |
118 |
Q |
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| T |
54302582 |
agagtgtacacaattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttaagaaat |
54302681 |
T |
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| Q |
119 |
gtcttcatcatttgatgcactccaaaaacaatcagctgccgtagtgataatatagacttcaatacctcttaaagccaaatgatctgcaacaaattctcta |
218 |
Q |
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| T |
54302682 |
gtcttcatcatttgatgcactccaaaaacaatcagctgccgtagtgataatatggacttcaatacctcttaaagccaaatgatccgcaacaaattctcta |
54302781 |
T |
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| Q |
219 |
atctgcagacaatttcaatgtaaagaaagagttaacacgatggcaactttagagcttgacattttgaaaaaagtaaagggtgatttcagaatnnnnnnng |
318 |
Q |
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| T |
54302782 |
atctgcagacaatttgaatgtaaagaaagagctaacactatggcaactttagagcttgacattctgaaaaaagtaaagggtgatttcagaataaaaaaag |
54302881 |
T |
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| Q |
319 |
ataaacctgtatatatggagcaccgttcgccactttatacatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccgcgttca |
418 |
Q |
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| T |
54302882 |
ataaacctgtatatatggagcatcgttcgccactttatatatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccacgttca |
54302981 |
T |
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| Q |
419 |
tctc |
422 |
Q |
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| T |
54302982 |
tctc |
54302985 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 31306903 - 31306850
Alignment:
| Q |
176 |
ttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
229 |
Q |
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| T |
31306903 |
ttcaatacctcttagtgccatattttctgcaacaaaatctctaatctgcagaca |
31306850 |
T |
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