View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3441_low_1 (Length: 480)
Name: NF3441_low_1
Description: NF3441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3441_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 460
Target Start/End: Complemental strand, 44110317 - 44109872
Alignment:
| Q |
13 |
aatataaactagtataaattgattcagttcatgaaatgcaaaccccataaattattgttgaaggaagctatttaacttaaccgcgccttattaaagttag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44110317 |
aatataaactagtataaattgattcagttcatgaaatgcaaaccccataaattattgttgaaggaagctatttaacttaaccgcgccttattaaagttag |
44110218 |
T |
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| Q |
113 |
acaagaaaattcaattcctactnnnnnnnnntatttacttaaactgaatgtctcatcttctcatgtctgcaagttgattcttgacatccgccaggttctt |
212 |
Q |
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| T |
44110217 |
acaagaaaattcaattcctactaaaaaaa--tatttacttaaactgaatgtctcatcttctcatgtctgcaagttgattcttgacatccgccaggttctt |
44110120 |
T |
|
| Q |
213 |
caaaggcacaccatgtggtaaaaatggcgaacaggtaatctcgatctgctttaaaactcttgcattttgtaaaataaactcaacgaaactgattgaacta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44110119 |
caaaggcacaccatgtggtaaaaatggcgaacaggtaatctcgatcagctttaaaactcttgcattttgtaaaataaactcaacgaaactgattgaacta |
44110020 |
T |
|
| Q |
313 |
taatatccatgaaagtctgaaatctgaagcatcttgagagaagatttgaaacaataaggcactggaattaatgcatagtctctcttatcgacgattttgc |
412 |
Q |
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| T |
44110019 |
taatatccatgaaagtctgaaatctgaagcatcttgagagaagatttgaaacaataaggccctggaattaatgcatagtctctcttatcgacgattttgc |
44109920 |
T |
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| Q |
413 |
caattccctaaataagaatcaattaacaagttagcggatagaagtaat |
460 |
Q |
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| T |
44109919 |
caattccctaaataagaatcaattaacaagttagcggatagaagtaat |
44109872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 282 - 459
Target Start/End: Complemental strand, 40276975 - 40276787
Alignment:
| Q |
282 |
taaaataaactcaacgaaactgattgaactata---------atatccatgaaagtctgaaatctgaagcatcttgagagaaga--tttgaaacaataag |
370 |
Q |
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||||| |||||||| |||||||||||||||||| |||||||||||| | |||||| ||||| |||||||||||||| |||||||||||||| |
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| T |
40276975 |
taaaagaaactcaatgaaactgattgaactatatataatagaatatccatgaaaatttgaaatgtgaagtatcttgagagaagaaatttgaaacaataag |
40276876 |
T |
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| Q |
371 |
gcactggaattaatgcatagtctctcttatcgacgattttgccaattccctaaataagaatcaattaacaagttagcggatagaagtaa |
459 |
Q |
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| T |
40276875 |
gcactggaatttatgcatagtttctcttatccacgagtttgccaattccctaaattggaatcaattaacaagttagtggatagaagtaa |
40276787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 443
Target Start/End: Original strand, 40450314 - 40450493
Alignment:
| Q |
264 |
taaaactcttgcattttgtaaaataaactcaacgaaactgattgaactataatatccatgaaagtctgaaatctgaagcatcttgagagaagatttgaaa |
363 |
Q |
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||||| ||||||||||| ||||| |||||||| ||| |||| || || | |||||| | | | |||||| ||||||||||||||||||||||||||| |
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| T |
40450314 |
taaaagtcttgcattttttaaaacaaactcaatgaattggattccacgatcagatccatcatattttgaaatgtgaagcatcttgagagaagatttgaaa |
40450413 |
T |
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| Q |
364 |
caataaggcactggaattaatgcatagtctctcttatcgacgattttgccaattccctaaataagaatcaattaacaagt |
443 |
Q |
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||| |||||||||||||||||| |||| || |||| | || |||| || | ||||||||||||||||||||||||| |
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| T |
40450414 |
caacaaggcactggaattaatgtcgagtcattcatatccaagaatttggtaactgcctaaataagaatcaattaacaagt |
40450493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 40450213 - 40450254
Alignment:
| Q |
169 |
cttctcatgtctgcaagttgattcttgacatccgccaggttc |
210 |
Q |
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|||| |||| |||||||||| ||||||||||||||||||||| |
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| T |
40450213 |
cttcccatgcctgcaagttggttcttgacatccgccaggttc |
40450254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 40507017 - 40507058
Alignment:
| Q |
169 |
cttctcatgtctgcaagttgattcttgacatccgccaggttc |
210 |
Q |
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|||| |||| |||||||||| ||||||||||||||||||||| |
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| T |
40507017 |
cttcccatgcctgcaagttggttcttgacatccgccaggttc |
40507058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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