View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3441_low_10 (Length: 262)
Name: NF3441_low_10
Description: NF3441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3441_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 5984873 - 5984647
Alignment:
| Q |
13 |
aagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccg |
112 |
Q |
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| T |
5984873 |
aagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccg |
5984774 |
T |
|
| Q |
113 |
aagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataattaaagagcaca |
212 |
Q |
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| T |
5984773 |
aagagcatagagtaagggaagtacacacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaa----taaagagcaca |
5984678 |
T |
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| Q |
213 |
caaatacaaccccatcaagcaaccaagcaaa |
243 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5984677 |
caaatacaaccccatcaagcaaccaagcaaa |
5984647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 5968864 - 5968684
Alignment:
| Q |
13 |
aagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccg |
112 |
Q |
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||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5968864 |
aagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccg |
5968765 |
T |
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| Q |
113 |
aagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactg |
193 |
Q |
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| T |
5968764 |
aagagcatagagtaagggaagtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactg |
5968684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 8715283 - 8715463
Alignment:
| Q |
13 |
aagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccg |
112 |
Q |
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||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8715283 |
aagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccg |
8715382 |
T |
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| Q |
113 |
aagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactg |
193 |
Q |
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| T |
8715383 |
aagagcatagagtaagggatgtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactg |
8715463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 5963743 - 5963544
Alignment:
| Q |
1 |
agaggagaagcaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtca |
100 |
Q |
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|||| |||| |||| |||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
5963743 |
agagcagaaccaaaaggaattccaaaatcagtatcaaaattggcaagcacatcatcaagagttccttcaccaaatagaaggaacccaaagaagcttgtca |
5963644 |
T |
|
| Q |
101 |
gtaagtacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataa |
200 |
Q |
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| T |
5963643 |
gtacatatactgaagagcatagagtaagggaagtacgcacaaccccacgcatccgtgaggaatcctccagttcattatcaatgttatgaactgcaaataa |
5963544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 5935341 - 5935147
Alignment:
| Q |
6 |
agaagcaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaag |
105 |
Q |
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|||| |||| |||||||| |||| || ||||||||||||||| |||||| |||| | ||||||||||||||||| ||||||||||||||||||||| |
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| T |
5935341 |
agaaccaaaaggaattccgagattagtatcaaaattggcaagaacgtcaggaagagtatcgtcaccaaatagaaggaacccaaagaagcttgtcagtaag |
5935242 |
T |
|
| Q |
106 |
tacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataa |
200 |
Q |
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| T |
5935241 |
taaactgaagagcatagagtaagggaagcacgcacaacgccatgcatccatgaggagtcctccagttcattatctatgttgtgaactgcaaataa |
5935147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 195
Target Start/End: Original strand, 5628142 - 5628331
Alignment:
| Q |
6 |
agaagcaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaag |
105 |
Q |
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|||| |||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||| ||| ||| |
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| T |
5628142 |
agaaccaaaaggaattccaagatcagcatcgaaattggcaagtacgtcatcaagagttccttcaccaaataggaggaacccaaagaagcttatcattaaa |
5628241 |
T |
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| Q |
106 |
tacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgca |
195 |
Q |
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||||| || ||||||||| |||| ||||| ||||| || |||| ||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
5628242 |
tacacggatgagcatagaccgagggctgtacgtacaacgccttgcatctgtgagttgtcctcgagttcattatctatgctgtgaactgca |
5628331 |
T |
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