View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3441_low_11 (Length: 256)

Name: NF3441_low_11
Description: NF3441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3441_low_11
NF3441_low_11
[»] chr1 (3 HSPs)
chr1 (41-256)||(22049-22253)
chr1 (42-254)||(1316-1527)
chr1 (45-256)||(12231-12442)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 41 - 256
Target Start/End: Original strand, 22049 - 22253
Alignment:
Q  41 caaacaaacgattagtatatataaatacaaacataaatgaaaggaaaacaccaacaagatacgataataatatgttaagaaaactttgtatttaattgtt 140  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||        |||||||    
T  22049 caaacaaacgattagtgtatataaatacaaacataaatgaaaggaaaataccaacaagatacgataata---tgttaagaaaact--------aattgtt 22137  T
Q  141 cggatcatccacggtcaaatttatggtgcaaccgattgcagtccataagattaatatagataaaattaatctctcttaatctaatagtctaaacttgcat 240  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22138 cggatcatccatggtcaaatttatggtgcaaccgattgcagaccataagattaatatagataaaattaatctctcttaatctaatagtctaaacttgcat 22237  T
Q  241 gcaacataaatctagt 256  Q
    ||| ||||||||||||    
T  22238 gcaccataaatctagt 22253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 254
Target Start/End: Original strand, 1316 - 1527
Alignment:
Q  42 aaacaaacgattagtatatataaatacaaacataaatgaaaggaaaacaccaacaagatacgataataatatgttaagaaaactttgtatttaattgttc 141  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||  || |||||    
T  1316 aaacacacgataagtatatataaatacaagcataaatgaaaggaaaataccaataagatacgataataatatcttaagaaaactttgtatcaaactgttc 1415  T
Q  142 ggatcatccacggtcaaatttatggtgcaaccgattgcagtccataagattaatatagataaaattaatctctcttaatctaatagtctaaacttgcatg 241  Q
      |||||||||  ||||| | | ||||||||  | || || |||| |||||||||||||||||||| |||| ||||||| |||  ||||||||||| |||    
T  1416 aaatcatccacattcaaa-tcacggtgcaacaaactgtagaccattagattaatatagataaaatttatctttcttaatttaacggtctaaacttggatg 1514  T
Q  242 caacataaatcta 254  Q
    || ||||||||||    
T  1515 caccataaatcta 1527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 45 - 256
Target Start/End: Original strand, 12231 - 12442
Alignment:
Q  45 caaacgattagtatatataaatacaaacataaatgaaaggaaaacaccaacaagatacgataataatatgttaagaaaactttgtatttaattgttcgga 144  Q
    |||||||| |||||||||||||||||   ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||  ||   ||| ||    
T  12231 caaacgataagtatatataaatacaagtgtaaatgaaaggaaaataccaataagatacgataataatatcttaagaaaactttgtatcaaaccattcaga 12330  T
Q  145 tcatccacggtcaaatttatggtgcaaccgattgcagtccataagattaatatagataaaattaatctctcttaatctaatagtctaaacttgcatgcaa 244  Q
    ||||||||  |||||||||   ||||||  | || ||  ||| |||||||||||||||||||| ||||| |||||| |||  ||||||||||| ||||      
T  12331 tcatccacattcaaatttactttgcaacaaactgtagatcattagattaatatagataaaatttatctcgcttaatttaacggtctaaacttggatgcgc 12430  T
Q  245 cataaatctagt 256  Q
    ||||||||||||    
T  12431 cataaatctagt 12442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University