View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3441_low_12 (Length: 250)
Name: NF3441_low_12
Description: NF3441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3441_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 10202156 - 10202395
Alignment:
| Q |
1 |
tataacaggcatgtcgcctcgggaaaaattggatatgtagaaaagtttgtgaagaatggaagacaaacagttgaatgtttgaaagagattggtgacatat |
100 |
Q |
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| T |
10202156 |
tataacaggcatgtcgcttcgggaaaaattggatatgtagaaaattttgtgaagaatggaagacaaacagttgaatgtttgaaagagattggtgacatat |
10202255 |
T |
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| Q |
101 |
actctttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggaggaatgtccagaacttggatcagttggtga |
200 |
Q |
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| T |
10202256 |
actctttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggaggaatgtccagaacttggatcagttggtga |
10202355 |
T |
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| Q |
201 |
tattttagcttcttcagattttgatattcatggctctgtg |
240 |
Q |
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| T |
10202356 |
tattttagcttcttcagattttgatattcatggttctgtg |
10202395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 51741355 - 51741593
Alignment:
| Q |
1 |
tataacaggcatgtcgcctcgggaaaaattggatatgtagaaaagtttgtgaagaatggaagacaaacagttgaatgtttgaaagagattggtgacatat |
100 |
Q |
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||||||||| |||| || || ||| | ||||||||||| |||||||||||||| |||||| ||||||||| |||| ||||||||||||||| ||| | | |
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| T |
51741355 |
tataacaggtatgtggcttcaggacagattggatatgtggaaaagtttgtgaaagatggaacacaaacagtggaatctttgaaagagattggggacttgt |
51741454 |
T |
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| Q |
101 |
actctttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggaggaatgtccagaacttggatcagttggtga |
200 |
Q |
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| T |
51741455 |
actctttgtttatagtaggaagaggtggtagaggaaatagttcattaacaataggtatgagtgattgggaagaatgtccagaacttggaacggttggtga |
51741554 |
T |
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| Q |
201 |
tattttagcttcttcagattttgatattcatggctctgt |
239 |
Q |
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| T |
51741555 |
tgtcttggcttcttcagactttgatattcatggttctgt |
51741593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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