View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3441_low_13 (Length: 237)
Name: NF3441_low_13
Description: NF3441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3441_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 22322 - 22536
Alignment:
| Q |
5 |
tttgaacatcattgaacatgtataaataaggttgtacacgaatttattataacaagaaccactcctccgtgtaaaaatgtacaattccttctttatatct |
104 |
Q |
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| T |
22322 |
tttgaacatcattgaacatgtataaataaggttgtacaagaatttattataacaataaccactcctccatgtaaaaatgtacaattccttctttatattt |
22421 |
T |
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| Q |
105 |
aataaatatttgactggtaattaaaaaattgaaaatttagtcaataatcataacatacctcaatttactaccgactattaagggttcgacttatatcaac |
204 |
Q |
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| T |
22422 |
aatgaatacttgactggtaattaaaaaactgtaaatttagtcaataatcataacatacctcaattcactactaactattaagggttcgact--tatcaac |
22519 |
T |
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| Q |
205 |
aacacgataaagaaaat |
221 |
Q |
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||||| |||||| |||| |
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| T |
22520 |
aacacaataaagcaaat |
22536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 12508 - 12600
Alignment:
| Q |
2 |
tcctttgaacatcattgaacatgtataaataaggttgtacacgaatttattataacaagaaccactcctccgtgtaaaaatgtacaattcctt |
94 |
Q |
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| T |
12508 |
tcctatgaacatcaatgaacatgtaaaaataagtttgtacaaaaaattattataataagaaccactcctccatataaaaacgtacaatccctt |
12600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 1630 - 1723
Alignment:
| Q |
2 |
tcctttgaacatcattgaacatgtataaataaggttgtacacgaatttattataacaagaaccactcctccgtgtaaaaatgtacaattccttc |
95 |
Q |
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| T |
1630 |
tcctatgaacatcaatgaacatgtcaaaataagattgtacaaaaaattaatataacaagaaccactcgtccatgtaaaaacgtccaatcccttc |
1723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 10024636 - 10024509
Alignment:
| Q |
17 |
tgaacatgtataaataaggttgtacacgaatttattataacaagaaccactcctccgtgtaaaaatgtacaat---tccttctttatatctaataaatat |
113 |
Q |
| |
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||||||| ||||||||||||||| || |||| ||| ||| ||||| |||||| |||||||||||||||| | |||||||| ||||| |||||| |
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| T |
10024636 |
tgaacatctataaataaggttgtccaaaaattgatt---acagcaaccaatcctccatgtaaaaatgtacaatctgttcttctttaaatctagcaaatat |
10024540 |
T |
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| Q |
114 |
ttgactggtaattaaaaaattgaaaatttag |
144 |
Q |
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| T |
10024539 |
ttgatttgtaatttaaaaattaaaaatttag |
10024509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 1722 - 1777
Alignment:
| Q |
164 |
tcaatttactaccgactattaagggttcgacttatatcaacaacacgataaagaaaat |
221 |
Q |
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| T |
1722 |
tcaattaactactgactattaagggttcgact--tatcaacaacacggtaaagcaaat |
1777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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