View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3441_low_8 (Length: 314)
Name: NF3441_low_8
Description: NF3441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3441_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 50 - 308
Target Start/End: Original strand, 6628653 - 6628911
Alignment:
| Q |
50 |
acttaaaatgatggctaagctgcataccatctaaacgcataataattgtgcatatgatatcatgtgtttaggtgcgcacacagtccaaacatggttccta |
149 |
Q |
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| T |
6628653 |
acttaaaatgatggctaagctgcataccatctaaacgcataatagttgtgcatatgatatcatgtgtttaggtgcgcacacagtccaaacatggttccta |
6628752 |
T |
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| Q |
150 |
attgaaactacgattgtttcatcctaaaattagaaggtcttaagtacgtcaattctttaatcaagagaatgattaataggatgtgaaccaattaatattg |
249 |
Q |
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| T |
6628753 |
attgaaactacgattgtttcatcctaaaattagaaggtcttaagtacgtcaattctttaatcaagagaatgattaataggatgtgaaccaattaatattg |
6628852 |
T |
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| Q |
250 |
tcatagatcttaagaaaaagaaaactaacaacttgttgcttcaattgcacctttgcttc |
308 |
Q |
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| T |
6628853 |
tcatagatcttaagaaaaagaaaactaacaacttgttgcttcaattgcacctttacttc |
6628911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 6628570 - 6628603
Alignment:
| Q |
19 |
agttagcctcaaatgtcatacaaagaaaaagact |
52 |
Q |
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| T |
6628570 |
agttagcctcaaatgtcatacaaagaaaaagact |
6628603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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