View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3442_high_11 (Length: 201)
Name: NF3442_high_11
Description: NF3442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3442_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 31940169 - 31940349
Alignment:
| Q |
1 |
ctttccagattttagatgcactctttcaacagaggggtcccattccaccnnnnnnnctttaacaagcactcccttgaggtccctgaagtttgccccctaa |
100 |
Q |
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| T |
31940169 |
ctttccagattttagatacactctttcaacagaggggtcccattccacctttttttctttaacaagcactcccttgaggtccctgaagtttgccccctaa |
31940268 |
T |
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| Q |
101 |
aagggcaagcaagcacaattaaaatttacatagagcaacaaagataaaataatagtactacataatatcaattcaagatac |
181 |
Q |
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| T |
31940269 |
aaaggcaagcaagcacaattaaaatttacatagagcaacaaagataaaatgacagtactacataatatcaattcaagatac |
31940349 |
T |
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Target: chr5 (Bit Score: 99; Significance: 4e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 9390521 - 9390652
Alignment:
| Q |
1 |
ctttccagattttagatgcactctttcaacagaggggtcccattccaccnnnnnnnctttaacaagcactcccttgaggtccctgaagtttgccccctaa |
100 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9390521 |
ctttccagattttagatacactctttcaactgaggggtcccattccaccttgttttctttaacaagcactcccttgaggtccctgaagtttgccccctaa |
9390620 |
T |
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| Q |
101 |
aagggcaagcaagcacaattaaaatttacata |
132 |
Q |
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| T |
9390621 |
aaaggcaagcaagcacaattaaaatttacata |
9390652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 1338360 - 1338532
Alignment:
| Q |
5 |
ccagattttagatgcactctttcaacagaggggtcccattccaccnnnnnnnctttaacaagcactcccttgaggtccctgaagtttgccccctaaaagg |
104 |
Q |
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| T |
1338360 |
ccagattttagatacactcttttaaaagacgggtcccattccaccttattttctttaacaagaacacccttgaggtccctgaagtttgccccctaaaaag |
1338459 |
T |
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| Q |
105 |
gcaagcaagcacaattaaaatttacatagagcaacaaagataaaataatagtactacataatatcaattcaagata |
180 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||||| |||||| |
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| T |
1338460 |
gcaagcaagcacaattagaatttacatggagcaacaaagataaaataacag---tacataatatcaattaaagata |
1338532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 5640246 - 5640418
Alignment:
| Q |
5 |
ccagattttagatgcactctttcaacagaggggtcccattccaccnnnnnnnctttaacaagcactcccttgaggtccctgaagtttgccccct-aaaag |
103 |
Q |
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|||||||| |||| |||||||||||||||||||||||| ||||| |||| |||||||| ||||| |||||||||||||||||||||| |||| |
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| T |
5640246 |
ccagatttcagatacactctttcaacagaggggtcccactccacttttttttctttcacaagcacaccctttaggtccctgaagtttgccccctaaaaaa |
5640345 |
T |
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| Q |
104 |
ggcaagcaagcacaattaaaatttacatagagcaacaaagataaaataatagtactacataatatcaattcaagat |
179 |
Q |
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|||||| | |||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| |
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| T |
5640346 |
ggcaagaatgcacaattaaaatttacagggagcaacaaagataaaataacag---aacataatatcaattcaagat |
5640418 |
T |
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