View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3442_high_2 (Length: 401)
Name: NF3442_high_2
Description: NF3442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3442_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 55209061 - 55209270
Alignment:
| Q |
18 |
ccttgcaggcatctttgttcgtgtaaagcgtgtgagccttctctccaagcatgtcctgtgtgcctcatgccaaagagatctactatagagactctctttc |
117 |
Q |
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| T |
55209061 |
ccttgcaggcatctttgttcgtgtaaagcgtgtgaaccttctctccaagcatgtcctgtgtgcctcatgccaaagagatctactatagagactctctttc |
55209160 |
T |
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| Q |
118 |
tctaggatcatgtagttctagtaaatttacttacttaatgacaaggacaatgatcaatttcaacttgattgagagttcctctcttcaacttcagctacta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
55209161 |
tctaggatcatgtagttctagtaaatttacttacttaatgacaaggacaatgatcaatttcaacttgattgagagtttctctcttcaacttcggctacta |
55209260 |
T |
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| Q |
218 |
tagagaatga |
227 |
Q |
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|||||||||| |
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| T |
55209261 |
tagagaatga |
55209270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 367
Target Start/End: Original strand, 55209356 - 55209387
Alignment:
| Q |
336 |
ggttaatgcattagtgttttttaaactaattt |
367 |
Q |
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| T |
55209356 |
ggttaatgcattagtgttttttaaactaattt |
55209387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 13135550 - 13135662
Alignment:
| Q |
18 |
ccttgcaggcatctttgttcgtgtaaagcgtgtgagccttctctccaagcatgtcctgtgtgcctcatgccaaagagatctactatagagactctctttc |
117 |
Q |
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| T |
13135550 |
ccttgcaggcacctatgttcatgtaaatcatgtgaaccttctctccaaacatgtcctgtgtgcttaatgccaaagagatctattatagagactctccctt |
13135649 |
T |
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| Q |
118 |
tctaggatcatgt |
130 |
Q |
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| T |
13135650 |
tctaggatcatgt |
13135662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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