View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3442_high_4 (Length: 253)
Name: NF3442_high_4
Description: NF3442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3442_high_4 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 12328815 - 12328581
Alignment:
| Q |
19 |
ctaatgagcatcatgaaaatttctttttgttcttttaaagccctaaagggtgaaattatgaaaatcaaagagaatataatcatttgttgaggcatgaccc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12328815 |
ctaatgagcatcatgaaaatttctttttgttcttttaaagccctaaagggtgaaattatgaaaatcaaagagaatataatcatttgttgaggcatgaccc |
12328716 |
T |
|
| Q |
119 |
tacacggtttatgtcttgatctttagtcgacacgattttaaaacttgtgattctcactataagaatcttttaagagttagattttcatttgtagaaaatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12328715 |
tacacggtttatgtcttgatctttagtcgacacgattttaaaacttgtgattctcactataagaatcttttaagagttagaatttcatttgtagaaaatt |
12328616 |
T |
|
| Q |
219 |
tgactaactaatatctctttcctttcacggtactt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
12328615 |
tgactaactaatatctctttcctttcacggtactt |
12328581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University