View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3442_low_1 (Length: 933)
Name: NF3442_low_1
Description: NF3442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3442_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 663; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 144 - 915
Target Start/End: Complemental strand, 46769113 - 46768331
Alignment:
| Q |
144 |
tatttgagggtgtaaattttggattagggttcaattaccgaacacgataagattatattggttgctcaatcaagaccaaacacgacccaaattttaaatc |
243 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46769113 |
tatttgagggtgtaaattttggattaaggttcaattattgaacacgataagattatattggttgctcaatcaagaccaaacacgacccaaattttaaatc |
46769014 |
T |
|
| Q |
244 |
gtattttaaatttaaaaagaaattaaaatctagtttgagttttagatggccaatcaaacggacataatatggttgggtgagtgaagtcgtggaactgtga |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46769013 |
gtattttaaatttaaaaagaaattaaaatctagattgagtttcagatggccaatcaaacggacataatatggttgggtgagtgaagtcgtggaactgtga |
46768914 |
T |
|
| Q |
344 |
cccgcacatggtagtaaattatttgacttcagtaaactgagtcatttccnnnnnnngga-ggtaattttacaacttttatatttaaacactcttaaattt |
442 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46768913 |
ctcgcacatggtagtaaattatttggcttcagtaaactgagtcatttccaaaaaagggaaggtaattttacaacttttatatttaaacactcttaaattt |
46768814 |
T |
|
| Q |
443 |
cctacatttatttaacaccttattttctctatatattt----------tcctattacaccaacaacatatcacatcttttagatcactcactctatctct |
532 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46768813 |
cctacatttatttaacaccttattttatatatatatatatatatatcttcctattacaccaacaacatatcacatcttttagatcactcactctatctct |
46768714 |
T |
|
| Q |
533 |
ctctcaagagatgggcttttggtgtctatcaatctatatctcttcatatcagatcatatcaatatcattttccataattttatgagatgtgtacaatcca |
632 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46768713 |
ctctcaagagatgggcttttggtgtctatcaatctatatctcttcatatcagatcatatcaatatcattttccataattttatgaaatgtgtacaatcct |
46768614 |
T |
|
| Q |
633 |
ttggtcaacactttacgaatttttccacaaaggatggaaataaatatatatagaatatattcagtgtattatttatacgaagtaaaaagaatgtggttgt |
732 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46768613 |
ttggtcaacactttactaatttttccacaaaggatggaaataaatatatatagaatatattcagtgtattatttatacgaagtaaaaagaatgtggttgt |
46768514 |
T |
|
| Q |
733 |
aacaaaatgaacagccctagcactgatgcttaaacaaaacaagaaataaagcaaatgtggcaatataaatacagcatccaatcatgaaagcaaatcatga |
832 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46768513 |
aacaaaatgaacagccctagcactgatgcttaaacaaaacaagaaataaagcaaatgtggcaatataaatacagcatccaatcatgaaagcaaatcatga |
46768414 |
T |
|
| Q |
833 |
acaaaacataacataaactatagtaagtgactgactgagaggaaatttaaaatttctcaaatttcaggtatgccgttcatgga |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46768413 |
acaaaacataacataaactatagtaagtgactgactgagaggaaatttcaaatttctcaaatttcaggtatgccgttcatgga |
46768331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 709 - 915
Target Start/End: Complemental strand, 46773305 - 46773111
Alignment:
| Q |
709 |
acgaagtaaaaagaatgtggttgtaacaaaatgaacagccctagcactgatgcttaaacaaaacaagaaataaagcaaatgtggcaatataaatacagca |
808 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||| || |
|
|
| T |
46773305 |
acgaagtaaaaagaatgtgtttgtaacctaatgaacagcactag------tgcttaaacaaagcaagaaactaagcaaatgtggcaatataaatacaaca |
46773212 |
T |
|
| Q |
809 |
tccaatcatgaaagcaaatcatgaacaaaacataacataaactatagtaagtgactgactgagaggaaatttaaaatttctcaaatttcaggtatgccgt |
908 |
Q |
| |
|
||||| | ||||| | ||||| |||||||||||| ||| |||| ||||||||| || | | |||| ||||||||||||||||||||||| ||| |
|
|
| T |
46773211 |
tccaagcttgaaaactaatcacgaacaaaacata----taacactagttagtgactga--tagggaatatttcaaatttctcaaatttcaggtatggcgt |
46773118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 46769245 - 46769179
Alignment:
| Q |
12 |
aggcatgtaacaatgttagatctcttgaggaagaattttgtcatcaattgtggtgttacgggtcaat |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
46769245 |
aggcatgtaacaatgttagatctcttgaggaagaactttgttatcaattgtggtgttatcggtcaat |
46769179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 38126973 - 38127012
Alignment:
| Q |
16 |
atgtaacaatgttagatctcttgaggaagaattttgtcat |
55 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
38126973 |
atgtaacaatgttaaatcttttgaggaagaattttgtcat |
38127012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 38230939 - 38230980
Alignment:
| Q |
19 |
taacaatgttagatctcttgaggaagaattttgtcatcaatt |
60 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
38230939 |
taacaatgttaaatctcttgagaaagaattttgccatcaatt |
38230980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University