View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3442_low_2 (Length: 465)
Name: NF3442_low_2
Description: NF3442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3442_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 33 - 461
Target Start/End: Complemental strand, 45641613 - 45641185
Alignment:
| Q |
33 |
cttgcccctcaactaaaccattttcattgaacatcccataaattcaccgcaagtgttctcttctcagacataatgccactgaatttcaaaatgagacagg |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641613 |
cttgcccctcaactaaaccattttcattgaacatcccataaattcaccgcaagtgttctcttctcagacataatgccactgaatttcaaaatgagacagg |
45641514 |
T |
|
| Q |
133 |
acagaagaaacaccccacaatacagacaaattccatctgaacacaacaaaataaaatcaataatggatatccaaacattactaatcaatcattcaatcaa |
232 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641513 |
acagaacaaacacccaacaatacagacaaattccatctgaacacaacaaaataaaatcaataatggatatccaaacattactaatcaatcattcaatcaa |
45641414 |
T |
|
| Q |
233 |
tgattcaatatgtggattgcattctttggaacaaaaatcattcttctctaataaactcttcaacatagaatgagtaaatttaggatcattagggtcacta |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641413 |
tgattcaatatgtggattgcattctttggaacaaaaatcattcttctctaataaactcttcaacatagaatgagtaaatttaggatcattagggtcacta |
45641314 |
T |
|
| Q |
333 |
ccagttgacccattagggttttccaatacatttggacgcgaaaaacaaaacttgcaaccaaatccatttcgagtagtagtactattatgaccctcacctt |
432 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641313 |
ctagttgacccattagggttttccaatacatttggacgcgaaaaacaaaacttgcaaccaaatccatttcgagtagtagtactattatgaccctcacctt |
45641214 |
T |
|
| Q |
433 |
gaataatcaccaccttacctatgctactc |
461 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
|
|
| T |
45641213 |
gaataatcaccaccttacctctgctactc |
45641185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University